# Internal Ion Pairs Control Transport Through TonB-Dependent Siderophore Receptors

**Authors:** Salete M. Newton, Phillip E. Klebba

PMC · DOI: 10.3390/ijms27042007 · International Journal of Molecular Sciences · 2026-02-20

## TL;DR

This study shows that specific ion pairs in bacterial receptors are crucial for transporting iron-carrying molecules through the outer membrane.

## Contribution

The study identifies conserved internal ion pairs in TonB-dependent receptors that are essential for siderophore transport and structural stability.

## Key findings

- Disruption of site-2 ion pairs reduces or eliminates ferric siderophore uptake and colicin susceptibility.
- Site-2 mutations do not affect ligand binding affinity but destabilize the NTLD within the CTβB.
- Other ion pair sites (1, 3, 4) do not significantly impact siderophore uptake.

## Abstract

The TonB-dependent receptors (TBDRs) FepA and FhuA transport the siderophores ferric enterobactin (FeEnt) and ferrichrome (Fc), respectively, through the Gram-negative bacterial outer membrane. Their uptake mechanism involves conformational change in an ~150 residue N-terminal luminal domain (NTLD), located within their C-terminal β-barrel (CTβB) channels. We identified four internal sites (1–4) in TBDR that form a conserved network of ion pairs encircling the NTLD-CTβB interface. We tested the mechanistic importance of these electrostatic interactions by engineering systematic Ala substitutions in FepA and FhuA for the acidic or basic side chains that comprise them. Siderophore nutrition assays, colicin susceptibility tests and fluorescence spectroscopic uptake measurements of the mutants showed the importance of site-2, that adheres the base of NL1/Nβ3 and Nβ5 of the NTLD to β14 and β17 on the interior of the CTβB. Disruption of electrostatic bonds at site-2 reduced or eliminated ferric siderophore uptake and severely curtailed colicin susceptibility. Despite these reductions in ligand transport, fluorescent spectroscopic binding measurements showed that the site-2 mutations did not alter the affinity of FepA for FeEnt, nor FhuA for Fc. Elimination of ionic interactions at the three other locations in FepA (sites-1, -3, -4) did not reduce FeEnt uptake. Lastly, the disruption of ionic bonding at site-2 in FepA rendered it more susceptible to proteolysis, in part by OmpT, suggesting that ablation of ionic interactions in site-2 destabilized the NTLD within the CTβB. Overall, the experiments demonstrated that the ion pairs at site-2 in FepA and FhuA, that are evolutionarily conserved in the TBDR superfamily, are essential to the movement of ferric siderophores through the CTβB into the periplasm.

## Linked entities

- **Proteins:** fepA (ferrienterobactin outer membrane transporter), fhuA (ferrichrome outer membrane transporter), ompT (outer membrane protease VII)
- **Chemicals:** ferric enterobactin (PubChem CID 16048613), ferrichrome (PubChem CID 121489511)

## Full-text entities

- **Genes:** maltoporin [NCBI Gene 13906291], OmpT [NCBI Gene 3853531]
- **Diseases:** injury to (MESH:D014947), TBDRs (MESH:D019966), OM (MESH:D015433), NTLD (OMIM:300855)
- **Chemicals:** metal (MESH:D008670), ColM (-), methanol (MESH:D000432), gold (MESH:D006046), bis acrylamide (MESH:C021221), Sephadex LH20 (MESH:C025614), maltodextrin (MESH:C008315), Disulfide (MESH:D004220), Asp (MESH:D001224), MOPS (MESH:C008550), urea (MESH:D014508), Fc (MESH:D005291), FeCl3 (MESH:C024555), agar (MESH:D000362), FM (MESH:C037041), streptomycin (MESH:D013307), Ala (MESH:D000409), Arg (MESH:D001120), water (MESH:D014867), Cys (MESH:D003545), Iron (MESH:D007501), Lys (MESH:D008239), PBS (MESH:D007854), SDS (MESH:D012967), Glu (MESH:D018698), hydrogen (MESH:D006859), glucose (MESH:D005947), acrylamide (MESH:D020106), chloramphenicol (MESH:D002701), reactive oxygen species (MESH:D017382)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli B (strain) [taxon 37762], Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain) [taxon 99287], Homo sapiens (human, species) [taxon 9606], Enterobacterales (order) [taxon 91347], Yersinia pestis (species) [taxon 632]
- **Mutations:** E676A, E117A, D676, E511, D664, R133, D158, Glu in site-2, E567A, R126A, R93, R75, E250A, R126, E511_567A, S3968C, R75A, A698C, D117, E522A, Ala at site-2, R93A, E571, E250, S396C, E571A, R174, E567, D158A, E415, E522, Arg in site-2, E664A, E511A, Ala for Asp, R133A, R174A, E415A, D676A, R178A, D664A, Ala substitutions for Glu
- **Cell lines:** OKN359 — Homo sapiens (Human), Beckwith-Wiedemann syndrome, Finite cell line (CVCL_1N81), OKN17 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_8991), OKN2359 — Homo sapiens (Human), Xeroderma pigmentosum variant type, Finite cell line (CVCL_7358), K-12 — Felis catus (Cat), Feline mammary carcinoma, Cancer cell line (CVCL_IX41), OKN1359 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_8041), MG1655 — Homo sapiens (Human), Maple syrup urine disease, Transformed cell line (CVCL_D514), OKN7 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_H340)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12940499/full.md

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12940499/full.md

## References

104 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940499/full.md

---
Source: https://tomesphere.com/paper/PMC12940499