# Early Transcriptomic Response of Human Iris Stromal Cells During Herpes Simplex Virus Entry Reveals Interplay Between Cell Glycocalyx and Viral Exploitation

**Authors:** James Elste, Brian Zanotti, Madeline Schnurr, Micah J. Papanikolas, Erin J. Stephenson, Michelle Swanson-Mungerson, Michael V. Volin, Ronit Freeman, Vaibhav Tiwari

PMC · DOI: 10.3390/ijms27041771 · International Journal of Molecular Sciences · 2026-02-12

## TL;DR

This study explores how human iris cells respond early during herpes simplex virus infection, revealing key inflammatory pathways and potential targets for treatment.

## Contribution

The study identifies early transcriptomic changes in human iris stromal cells infected with HSV-1, highlighting conserved responses and potential therapeutic targets.

## Key findings

- HSV-1 rapidly activates IL-17, TNFα, MAPK, and NF-κB pathways in human iris stromal cells.
- Later stages show upregulation of epithelial–mesenchymal transition and G2/M checkpoint pathways.
- Modulation of HS3ST enzymes and loss of heparan sulfate and syndecans were observed during infection.

## Abstract

Herpes simplex virus type 1 (HSV-1) initiates infection through sequential interactions with host receptors, yet the early transcriptional responses driving HSV-mediated iritis remain poorly understood. Given the clinical burden of HSV-induced anterior uveitis and the lack of targeted therapies, we sought to define the initial host response to infection. We performed temporal transcriptomic profiling of primary human iris stromal (HIS) cells at 1, 3, and 6 h post-infection. HSV-1 triggered rapid and extensive gene expression changes, with early activation of IL-17, TNFα, MAPK, and NF-κB signaling pathways, all associated with inflammation and stress responses. At later time points, pathways related to epithelial–mesenchymal transition and the G2/M checkpoint were upregulated, alongside sustained inflammatory signaling, suggesting a balance between stromal integrity and stress adaptation. Imaging studies, together with transcriptomic data, revealed modulation of HS3ST enzymes and a corresponding loss of heparan sulfate and syndecans. These transcriptional dynamics mirror those observed in HSV-1-induced keratitis, indicating a conserved ocular response across cell types. By mapping these early events, this study identifies potential molecular targets for therapies aimed at mitigating inflammation during HSV-induced iritis.

## Linked entities

- **Genes:** IL17A (interleukin 17A) [NCBI Gene 3605], TNF (tumor necrosis factor) [NCBI Gene 7124], MAPK (mitogen activated kinase-like protein) [NCBI Gene 7446652], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], Hs3st-B (Heparan sulfate 3-O sulfotransferase-B) [NCBI Gene 32918]
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** NFKBIZ (NFKB inhibitor zeta) [NCBI Gene 64332] {aka I-kappa-B-zeta, IKBZ, INAP, IkappaB-zeta, MAIL, ikB-zeta}, MAB21L1 (mab-21 like 1) [NCBI Gene 4081] {aka CAGR1, COFG, Nbla00126}, TNFAIP3 (TNF alpha induced protein 3) [NCBI Gene 7128] {aka A20, AIFBL1, AISBL, OTUD7C, TNFA1P2}, HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1) [NCBI Gene 9957] {aka 3OST, 3OST1}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, HPSE (heparanase) [NCBI Gene 10855] {aka HPA, HPA1, HPR1, HPSE1, HSE1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, EXT2 (exostosin glycosyltransferase 2) [NCBI Gene 2132] {aka SOTV, SSMS}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, EGR3 (early growth response 3) [NCBI Gene 1960] {aka EGR-3, PILOT}, GALNT13 (polypeptide N-acetylgalactosaminyltransferase 13) [NCBI Gene 114805], RASD1 (ras related dexamethasone induced 1) [NCBI Gene 51655] {aka AGS1, DEXRAS1, MGC:26290}, HCFC1 (host cell factor C1) [NCBI Gene 3054] {aka CFF, HCF, HCF-1, HCF1, HFC1, MAHCX}, GDF5 (growth differentiation factor 5) [NCBI Gene 8200] {aka BDA1C, BMP-14, BMP14, CDMP1, DUPANS, LAP-4}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, TNFRSF14 (TNF receptor superfamily member 14) [NCBI Gene 8764] {aka ATAR, CD270, HVEA, HVEM, LIGHTR, TR2}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, SDC1 (syndecan 1) [NCBI Gene 6382] {aka CD138, SDC, SYND1, syndecan}, Mucin [NCBI Gene 100508689], EGR2 (early growth response 2) [NCBI Gene 1959] {aka AT591, CMT1D, CMT4E, KROX20}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, GGH (gamma-glutamyl hydrolase) [NCBI Gene 8836] {aka GATD10, GH}, PILRA (paired immunoglobin like type 2 receptor alpha) [NCBI Gene 29992] {aka FDF03}, JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase) [NCBI Gene 23210] {aka PSR, PTDSR, PTDSR1}, CXCL3 (C-X-C motif chemokine ligand 3) [NCBI Gene 2921] {aka CINC-2b, GRO3, GROg, MIP-2b, MIP2B, SCYB3}, RRAD (RRAD, Ras related glycolysis inhibitor and calcium channel regulator) [NCBI Gene 6236] {aka RAD, REM3}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, MUC5B (mucin 5B, oligomeric mucus/gel-forming) [NCBI Gene 727897] {aka MG1, MUC-5B, MUC5, MUC9}, MMP14 (matrix metallopeptidase 14) [NCBI Gene 4323] {aka MMP-14, MMP-X1, MT-MMP, MT-MMP 1, MT1-MMP, MT1MMP}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IER2 (immediate early response 2) [NCBI Gene 9592] {aka CHX1, ETR101}, FGF22 (fibroblast growth factor 22) [NCBI Gene 27006], TGFBR2 (transforming growth factor beta receptor 2) [NCBI Gene 7048] {aka AAT3, FAA3, LDS1B, LDS2, LDS2B, MFS2}, LRRN1 (leucine rich repeat neuronal 1) [NCBI Gene 57633] {aka FIGLER3, NLRR-1, NLRR1}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, MUC2 (mucin 2, oligomeric mucus/gel-forming) [NCBI Gene 4583] {aka MLP, MUC-2, SMUC}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, VIM (vimentin) [NCBI Gene 7431], PIM3 (Pim-3 proto-oncogene, serine/threonine kinase) [NCBI Gene 415116] {aka pim-3}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, ANGPTL7 (angiopoietin like 7) [NCBI Gene 10218] {aka AngX, CDT6, dJ647M16.1}, EGR1 (early growth response 1) [NCBI Gene 1958] {aka AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, LRRC17 (leucine rich repeat containing 17) [NCBI Gene 10234] {aka P37NB}, FOSB (FosB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2354] {aka AP-1, G0S3, GOS3, GOSB}, IER3 (immediate early response 3) [NCBI Gene 8870] {aka DIF-2, DIF2, GLY96, IEX-1, IEX-1L, IEX1}, SDC2 (syndecan 2) [NCBI Gene 6383] {aka CD362, HSPG, HSPG1, SYND2}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, CXCR2 (C-X-C motif chemokine receptor 2) [NCBI Gene 3579] {aka CD182, CDw128b, CMKAR2, IL8R2, IL8RA, IL8RB}, NECTIN1 (nectin cell adhesion molecule 1) [NCBI Gene 5818] {aka CD111, CLPED1, ED4, HIgR, HV1S, HVEC}, HOXA5 (homeobox A5) [NCBI Gene 3202] {aka HOX1, HOX1.3, HOX1C}, CCDC80 (coiled-coil domain containing 80) [NCBI Gene 151887] {aka CL2, DRO1, LINC01279, SSG1, URB, okuribin}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, NUAK2 (NUAK family kinase 2) [NCBI Gene 81788] {aka ANPH2, SNARK}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, SGK1 (serum/glucocorticoid regulated kinase 1) [NCBI Gene 6446] {aka SGK}, FGF8 (fibroblast growth factor 8) [NCBI Gene 2253] {aka AIGF, FGF-8, HBGF-8, HH6, KAL6}, JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}
- **Diseases:** HSV uveitis (MESH:D014605), pterygium (MESH:D011625), blindness (MESH:D001766), anterior uveitis (MESH:D014606), retinal detachment (MESH:D012163), corneal (MESH:D003316), Inflammatory (MESH:D007249), injury to (MESH:D014947), ischemic vasculitis (MESH:D020293), iritis (MESH:D007500), Pneumocystis jirovecii (MESH:D011020), fibrosis (MESH:D005355), Epstein-Barr virus (MESH:D020031), age-related macular degeneration (MESH:D008268), hepatitis B (MESH:D006509), cancer (MESH:D009369), glaucoma (MESH:D005901), corneal perforation (MESH:D057112), corneal involvement (MESH:C537363), HIS (MESH:D007499), herpetic (MESH:D020803), cataract (MESH:D002386), ocular hypertension (MESH:D009798), tissue injury (MESH:D017695), HSV (MESH:C536395), fungal keratitis (MESH:D009181), ocular disease (MESH:D005128), corneal damage (MESH:D065306), keratitis (MESH:D007634), HSK (MESH:D016849), Neisseria gonorrhoeae (MESH:D006069), cytotoxicity (MESH:D064420), HSV-1 infection (MESH:D006561), Infection (MESH:D007239), proliferative diabetic retinopathy (OMIM:603933), corneal stromal damage (MESH:D003317)
- **Chemicals:** TBS (MESH:D013725), PGE2 (MESH:D015232), Trizol (MESH:C411644), Giemsa (MESH:D001399), methyl cellulose (MESH:D008747), acyclovir (MESH:D000212), Glycine (MESH:D005998), HCl (MESH:D006851), ONPG (MESH:C055012), SDS (MESH:D012967), sulfate (MESH:D013431), Triton-X100 (MESH:D017830), glycans (MESH:D011134), paraformaldehyde (MESH:C003043), DAPI (MESH:C007293), glucosamine (MESH:D005944), PolyA (MESH:D011061), Tween-20 (MESH:D011136), PBS (MESH:D007854), HS (MESH:D006497), Alexa Fluor 594 (-), x-gal (MESH:C044888), Alexa Fluor 488 (MESH:C000711379)
- **Species:** Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), ATCC — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), HIS — Mus musculus (Mouse), Stromal cell line (CVCL_D134), SIRC — Oryctolagus cuniculus (Rabbit), Spontaneously immortalized cell line (CVCL_2724), African green monkey kidney — Chlorocebus aethiops (Green monkey), Embryonic stem cell (CVCL_RY74), KOS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_A7NT), CCL-881 — Homo sapiens (Human), Fabry disease, Finite cell line (CVCL_7305)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940423/full.md

## References

100 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940423/full.md

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Source: https://tomesphere.com/paper/PMC12940423