# Global Microbiome: Core and Unique Signatures Across Diverse Populations

**Authors:** Sherri Huang, Diptaraj S. Chaudhari, Rohit Shukla, Pushti Kanani, Rola S. Zeidan, Yi Lin, Wesley Burrow, Robert T. Mankowski, Shalini Jain, Hariom Yadav

PMC · DOI: 10.3390/ijms27041776 · International Journal of Molecular Sciences · 2026-02-12

## TL;DR

This study identifies core and unique gut microbiome patterns across diverse global populations and age groups, revealing how geography and age influence microbial composition.

## Contribution

The paper provides a systematic meta-analysis of 10,878 gut microbiome samples, revealing consistent and region-specific microbial signatures across age groups and continents.

## Key findings

- Firmicutes, Bacteroidetes, and Proteobacteria are core phyla across all geographic regions.
- Relative abundances of Bifidobacterium, Faecalibacterium, Lactobacillus, and Bacteroides vary by country.
- Actinobacteria abundance declines with age globally, while Bacteroidetes increases from childhood to adulthood.

## Abstract

Earlier analyses evaluating patterns of gut microbiota in individuals from different geographies and age groups are heterogeneous in methodology, precluding broader conclusions about the relationship between the gut microbiome and geographic region, age, and clinical health. Here, we systematically conducted a meta-analysis of 16s rRNA gut microbiome sequencing data representing 10,878 samples across North America, Europe, Africa, Asia and Oceania. Our analysis included 27 countries and three age groups (neonate to age 17, or AG01; ages 18 to 64, or AG02; 65 and above, or AG03). We identified that Firmicutes, Bacteriodetes, and Proteobacteria constitute core phyla across geographic regions. A differing predominance of top families alongside core family Lachnospiracaeae across regions comprised unique microbiome signatures. Countries also differed in their relative abundances of Bifidobacterium, Faecalibacterium, Lactobacillus and Bacteroides. We found in our age analyses that Proteobacteria and Actinobacteria were the most abundant phyla in AG01, and Actinobacteria abundance declined across all continents with increasing age. The relative abundance of Bacteriodetes increased between AG01 and AG02. Enrichment of asthma-associated Enterobacterieaceae in AG01 was highest for North America, followed by Europe and then in Asia. We discuss the correlation of these gut microbial patterns in the context of dietary patterns, populations health, clinical health trends, and healthy aging.

## Linked entities

- **Diseases:** asthma (MONDO:0004979)

## Full-text entities

- **Diseases:** obesity (MESH:D009765), injury to (MESH:D014947), gut inflammation (MESH:D007249), atopic conditions (MESH:C566404), Alzheimer's (MESH:D000544), diabetes (MESH:D003920), gut dysbiosis (MESH:D064806), cancers (MESH:D009369), asthma (MESH:D001249), type 2 diabetes (MESH:D003924), inflammatory bowel disease (MESH:D015212), dementia (MESH:D003704), chronic disease (MESH:D002908), CRC (MESH:D015179), atherosclerosis (MESH:D050197), cardiovascular disease (MESH:D002318)
- **Chemicals:** copper (MESH:D003300), fiber (MESH:D004043), zinc (MESH:D015032), lead (MESH:D007854), cadmium (MESH:D002104), arsenic (MESH:D001151), heavy metals (MESH:D019216), saturated fats (-)
- **Species:** Veillonella (genus) [taxon 29465], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Actinomycetota (actinobacteria, phylum) [taxon 201174], Faecalibacterium (genus) [taxon 216851], Prevotella (genus) [taxon 838], Lactobacillus (genus) [taxon 1578], Enterobacteriaceae (enterobacteria, family) [taxon 543], Shigella (genus) [taxon 620], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Akkermansia (genus) [taxon 239934], Pseudomonas (RNA similarity group I, genus) [taxon 286], gut metagenome (species) [taxon 749906], Bacteroidia (class) [taxon 200643], Streptococcus (genus) [taxon 1301], Eggerthella (genus) [taxon 84111], Staphylococcus (genus) [taxon 1279], Bacteroides (genus) [taxon 816], Collinsella (genus) [taxon 102106], Clostridium (genus) [taxon 1485], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940378/full.md

## References

146 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940378/full.md

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Source: https://tomesphere.com/paper/PMC12940378