# NKGD2 Ligands (NKG2DLs) in Breast Cancer: In Silico Analysis and Narrative Review

**Authors:** Jesús Peña-López, Angelo Gámez-Pozo, Lucía Trilla-Fuertes, Fernando Becerril-Gómez, Marta Mendiola, Victoria Heredia, Laura Yébenes, Beatriz Castelo, Virginia Martínez-Marín, Enrique Espinosa, Pilar Zamora, Alfonso Alba-Bernal, Cristina Aguirre-Portolés, Antonio Pérez-Martínez

PMC · DOI: 10.3390/ijms27041848 · International Journal of Molecular Sciences · 2026-02-14

## TL;DR

This paper explores the role of NKG2D ligands in breast cancer using in silico analysis and a literature review, highlighting their potential as immunotherapy targets.

## Contribution

The study provides a comprehensive in silico and narrative analysis of NKG2D ligands in breast cancer, revealing their expression patterns and therapeutic relevance.

## Key findings

- NKG2DL transcripts are consistently expressed in breast cancer cell lines and tumor tissues.
- Higher NKG2DL expression is associated with ductal histology, advanced tumor stage, and basal molecular subtype.
- NKG2DLs are detectable in tumor tissues but not in surrounding healthy tissues according to immunohistochemistry.

## Abstract

Breast cancer (BC) is a global health problem. BC is a biologically heterogeneous disease in which novel immunotherapeutic strategies are needed, particularly in the metastatic setting. The NKG2D/NKG2D ligand (NKG2DL) axis is a key component of innate antitumor immunity and represents a potential therapeutic target, but its relevance in BC has not been fully characterized. We performed an in silico analysis of NKG2DL expression in BC cell lines, healthy breast tissue, and tumor samples using publicly available transcriptomic databases (DSMZCellDive, ShinyTHOR, GTEx, TCGA, Human Protein Atlas), complemented by survival analyses from TCGA and KMPlot and a narrative review of the literature. NKG2DL transcripts were consistently expressed in BC cell lines and tumor tissues, with higher expression observed in ductal histology, higher tumor stage, and basal molecular subtype. Survival analyses showed heterogeneous and generally weak associations between individual NKG2DLs and clinical outcomes. In silico proteomics data are scarce, but the narrative review showed that NKG2DLs are expressed by immunohistochemistry in tumor tissues but absent in surrounding healthy tissues. The literature review also revealed concomitant dysfunction of NKG2D+ effector cells due to multiple resistance mechanisms (including ligand shedding). We also review potential therapeutic approaches.

## Linked entities

- **Proteins:** KLRK1 (killer cell lectin like receptor K1)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Mink1 (misshapen-like kinase 1 (zebrafish)) [NCBI Gene 50932] {aka B55, MINK, Map4k6, Ysk2}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Inhca (inhibitor of carbonic anhydrase) [NCBI Gene 71775] {aka 1300017J02Rik, Ica, mICA}, Cd6 (CD6 antigen) [NCBI Gene 12511], Adam17 (a disintegrin and metallopeptidase domain 17) [NCBI Gene 11491] {aka CD156b, Tace}, ULBP1 (UL16 binding protein 1) [NCBI Gene 80329] {aka N2DL-1, NKG2DL1, RAET1I}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, Egfr (epidermal growth factor receptor) [NCBI Gene 13649] {aka 9030024J15Rik, Erbb, Errb1, Errp, Wa5, wa-2}, KLRC1 (killer cell lectin like receptor C1) [NCBI Gene 3821] {aka CD159A, NKG2, NKG2A}, H19 (H19, imprinted maternally expressed transcript) [NCBI Gene 14955] {aka EyeLinc6}, CXADRP1 (CXADR pseudogene 1) [NCBI Gene 653108] {aka CAR, CXADRP}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, MICB (MHC class I polypeptide-related sequence B) [NCBI Gene 4277] {aka PERB11.2}, NECTIN4 (nectin cell adhesion molecule 4) [NCBI Gene 81607] {aka EDSS1, LNIR, PRR4, PVRL4, nectin-4}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, Cbs (cystathionine beta-synthase) [NCBI Gene 12411] {aka HIP4}, MICA (MHC class I polypeptide-related sequence A) [NCBI Gene 100507436] {aka MIC-A, PERB11.1}, Vegfa (vascular endothelial growth factor A) [NCBI Gene 22339] {aka L-VEGF, Vegf, Vpf}, ULBP3 (UL16 binding protein 3) [NCBI Gene 79465] {aka N2DL-3, NKG2DL3, RAET1N}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, Tnfrsf9 (tumor necrosis factor receptor superfamily, member 9) [NCBI Gene 21942] {aka 4-1BB, A930040I11Rik, CDw137, Cd137, ILA, Ly63}, Cth (cystathionine gamma lyase) [NCBI Gene 107869] {aka 0610010I13Rik, CGL, CSE, Cys3}, Atm (ataxia telangiectasia mutated) [NCBI Gene 11920] {aka C030026E19Rik}, RAET1G (retinoic acid early transcript 1G) [NCBI Gene 353091] {aka ULBP5}, Ulbp1 (UL16 binding protein 1) [NCBI Gene 77777] {aka A430108B07Rik, MULT1}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Slc16a3 (solute carrier family 16 (monocarboxylic acid transporters), member 3) [NCBI Gene 80879] {aka Mct3, Mct4}, Il15 (interleukin 15) [NCBI Gene 16168] {aka IL-15}, Mapk8 (mitogen-activated protein kinase 8) [NCBI Gene 26419] {aka JNK, JNK1, Prkm8, SAPK1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, H60a (histocompatibility 60a) [NCBI Gene 15101] {aka H60}, Il7 (interleukin 7) [NCBI Gene 16196] {aka A630026I06Rik, Il-7, hlb368}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, Mir20a (microRNA 20a) [NCBI Gene 387139] {aka Mir-20, Mirn20, Mirn20a, mir-20a, mmu-mir-20a}, Mir26b (microRNA 26b) [NCBI Gene 387219] {aka Mirn26b, mir-26b, mmu-mir-26b}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Fcgr3 (Fc receptor, IgG, low affinity III) [NCBI Gene 14131] {aka CD16}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Klrc1 (killer cell lectin-like receptor subfamily C, member 1) [NCBI Gene 16641] {aka CD159a, NKG2A, NKG2B}, Il1rl1 (interleukin 1 receptor-like 1) [NCBI Gene 17082] {aka DER4, Fit-1, Ly84, ST2L, St2, St2-rs1}, Mill2 (MHC I like leukocyte 2) [NCBI Gene 243864] {aka Micb}, Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, Creb1 (cAMP responsive element binding protein 1) [NCBI Gene 12912] {aka 2310001E10Rik, 3526402H21Rik, Creb, Creb-1}, ULBP2 (UL16 binding protein 2) [NCBI Gene 80328] {aka ALCAN-alpha, N2DL2, NKG2DL2, RAET1H}, RAET1E (retinoic acid early transcript 1E) [NCBI Gene 135250] {aka LETAL, N2DL-4, NKG2DL4, RAET1E2, RL-4, ULBP4}, TACSTD2 (tumor associated calcium signal transducer 2) [NCBI Gene 4070] {aka EGP-1, EGP1, GA733-1, GA7331, GP50, M1S1}, Msln (mesothelin) [NCBI Gene 56047] {aka C-ERC, MPF}, Klrk1 (killer cell lectin-like receptor subfamily K, member 1) [NCBI Gene 27007] {aka D6H12S2489E, NKG2-D, Nkg2d}, Ctla4 (cytotoxic T-lymphocyte-associated protein 4) [NCBI Gene 12477] {aka Cd152, Ctla-4, Ly-56}, RPL17 (ribosomal protein L17) [NCBI Gene 6139] {aka DBA22, L17, PD-1, RPL23, uL22}, Fzd7 (frizzled class receptor 7) [NCBI Gene 14369] {aka Fz7}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, Erbb2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 13866] {aka Erbb-2, HER-2, HER2, Neu, c-erbB2, c-neu}, MOS (MOS proto-oncogene, serine/threonine kinase) [NCBI Gene 4342] {aka MSV, OZEMA20}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, KLRK1 (killer cell lectin like receptor K1) [NCBI Gene 22914] {aka CD314, D12S2489E, KLR, NKG2-D, NKG2D}, Jun (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 16476] {aka AP-1, Junc, c-jun}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}
- **Diseases:** TNBC.NKG2D (MESH:D000077428), sarcoma (MESH:D012509), neuroblastoma (MESH:D009447), acute myeloid leukemia (MESH:D015470), carcinogenesis (MESH:D063646), hypoxic (MESH:D002534), obese (MESH:D009765), Malignant mammary-tumor (MESH:D015674), ductal carcinoma in situ (MESH:D002285), Cancer (MESH:D009369), injury to (MESH:D014947), aggressiveness (MESH:D010554), colorectal or ovarian cancer (MESH:D010051), BC (MESH:D001943), RB (MESH:D012175), triple-negative breast cancer (MESH:D064726), lymphoma (MESH:D008223), nodal (MESH:D013611), cytotoxic (MESH:D064420), N (MESH:C536108), infections (MESH:D007239), leukemia (MESH:D007938), postmenopausal (MESH:D015663), BREAST (MESH:D061325), death (MESH:D003643), metastases (MESH:D009362)
- **Chemicals:** cyclophosphamide (MESH:D003520), itolizumab (MESH:C000597346), bevacizumab (MESH:D000068258), urelumab (MESH:C000620833), Propofol (MESH:D015742), Resveratrol (MESH:D000077185), enfortumab-vedotin (MESH:C000632577), fludarabine (MESH:C024352), Trastuzumab (MESH:D000068878), Tanshinol (MESH:C585969), lactate (MESH:D019344), Anthracyclines (MESH:D018943), selenocysteine (MESH:D017279), folic acid (MESH:D005492), 5-aza-cytidine (MESH:D001374), Docetaxel (MESH:D000077143), taxanes (MESH:D043823), spironolactone (MESH:D013148), Cordycepin (MESH:C058120), m6A (MESH:C005955), Sacituzumab-govitecan (MESH:C000608132), cetuximab (MESH:D000068818), pembrolizumab (MESH:C582435), everolimus (MESH:D000068338), ionomycin (MESH:D015759), Doxorubicin (MESH:D004317), H2S (MESH:D006862), Dichloroacetate (MESH:D003999), BSCS (-), Epirubicin (MESH:D015251)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G242A, Met/Val, S239D, I332E, -1562 C/T, G245A
- **Cell lines:** NK-92 — Homo sapiens (Human), Natural killer cell lymphoblastic leukemia/lymphoma, Cancer cell line (CVCL_2142), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), UBLP3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6)

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## References

150 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940375/full.md

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Source: https://tomesphere.com/paper/PMC12940375