# Genomics of Complex Neurodevelopmental Disorders with Variable Epilepsy Phenotypes: A Clinical Review of Dup15q Syndrome

**Authors:** Drew Thodeson, Trevor Lockard, Sookyong Koh

PMC · DOI: 10.3390/genes17020163 · Genes · 2026-01-30

## TL;DR

This paper reviews Dup15q syndrome as a model for understanding how genetic factors influence variable epilepsy and neurodevelopmental outcomes.

## Contribution

The paper highlights neurostimulation and precision medicine as emerging treatment approaches for Dup15q syndrome subtypes.

## Key findings

- Dup15q syndrome shows epilepsy variability due to gene dosing and UBE3A imprinting.
- Idic15 is linked to severe epilepsy and SUDEP, but overlaps with int15 in developmental traits.
- Neurostimulation and precision medicine show promise for treating Dup15q-related epilepsy.

## Abstract

Background: Complex neurodevelopmental disorders frequently reflect multiple neurologic symptoms which have shared molecular and network level mechanisms. Advances in genomic medicine have redefined these conditions as overlapping manifestations of brain circuit dysfunction with significant variability. This review examines the intersection of genomics, epilepsy, and neurodevelopment in complex neurodevelopmental disorders, emphasizing Dup15q syndrome as a model for understanding phenotypic variability. Methods: Authors conducted a clinical (non-systematic) review of the literature based on their experience with three patients with Dup15q who responded dramatically to neurostimulation. We synthesized current literature on genomic mechanisms underlying complex neurodevelopmental disorders focusing on Dup15q syndrome and its subtypes—int15, idic15, and mosaic idic15. We integrated clinical, electrophysiologic, and molecular data to illustrate the spectrum of epilepsy phenotypes and their mechanistic underpinnings. Results: Dup15q syndrome demonstrates marked heterogeneity in epilepsy severity and seizure semiology, reflecting variable gene dosing effects, maternal imprinting of UBE3A, and altered GABAergic signaling. While idic15 is more strongly associated with refractory epilepsy and SUDEP, both idic15 and int15 subtypes show overlapping developmental and behavioral phenotypes. There is a well-known differential response to anti-seizure medications and emerging evidence for neurostimulation and precision medicine. Conclusion: Dup15q syndrome exemplifies the convergence of genomic, neurophysiologic, and developmental pathways in epilepsy. As genomic discovery expands, precision therapies will increasingly rely on collaborative research networks. Understanding the genomic architecture of Dup15q syndrome may inform personalized strategies for epilepsy treatment and prevention.

## Linked entities

- **Genes:** UBE3A (ubiquitin protein ligase E3A) [NCBI Gene 7337]
- **Diseases:** epilepsy (MONDO:0005027)

## Full-text entities

- **Genes:** STXBP1 (syntaxin binding protein 1) [NCBI Gene 6812] {aka DEE4, MUNC18-1, N-Sec1, NSEC1, P67, RBSEC1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, KCNQ3 (potassium voltage-gated channel subfamily Q member 3) [NCBI Gene 3786] {aka BFNC2, EBN2, KV7.3}, GABARAP (GABA type A receptor-associated protein) [NCBI Gene 11337] {aka ATG8A, GABARAP-a, MM46}, KCNQ2 (potassium voltage-gated channel subfamily Q member 2) [NCBI Gene 3785] {aka BFNC, DEE7, EBN, EBN1, ENB1, HNSPC}, CYP46A1 (cytochrome P450 family 46 subfamily A member 1) [NCBI Gene 10858] {aka CP46, CYP46}, GABRG3 (gamma-aminobutyric acid type A receptor subunit gamma3) [NCBI Gene 2567], SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323] {aka DEE6, DEE6A, DEE6B, DRVT, EIEE6, FEB3}, UBE3A (ubiquitin protein ligase E3A) [NCBI Gene 7337] {aka ANCR, AS, E6-AP, EPVE6AP, HPVE6A, PIX1}, GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3) [NCBI Gene 2562] {aka DEE43, ECA5, EIEE43}, ARX (aristaless related homeobox) [NCBI Gene 170302] {aka CT121, EIEE1, ISSX, MRX29, MRX32, MRX33}, MECP2 (methyl-CpG binding protein 2) [NCBI Gene 4204] {aka AUTSX3, MRX16, MRX79, MRXS13, MRXSL, PPMX}, GABRA5 (gamma-aminobutyric acid type A receptor subunit alpha5) [NCBI Gene 2558] {aka DEE79, EIEE79}
- **Diseases:** idic15 (MESH:C580205), SUDEP (MESH:D000080485), deficiency of (MESH:D007153), death (MESH:D003643), brain circuit dysfunction (MESH:D001927), ID (MESH:D008607), Neuroimaging abnormalities (MESH:D000014), Rett, Angelman, and Dup15q syndromes (MESH:D017204), dysphagia (MESH:D003680), Epilepsy (MESH:D004827), Central hypotonia (MESH:D009123), GDD (MESH:D001037), juvenile myoclonic epilepsy (MESH:D020190), epilepsy syndrome (MESH:D000073376), attention deficits (MESH:D001289), neurodevelopmental dysfunction (MESH:D065886), epileptiform discharges (MESH:D019522), MCD (MESH:D054220), aggression (MESH:D010554), chronic pain (MESH:D059350), impulsivity (MESH:D007174), speech disorders (MESH:D013064), Joint laxity (MESH:D007593), neurodevelopmental impairment (MESH:D009422), cognitive and behavioral impairments (MESH:D003072), Neurodevelopmental Disorders (MESH:D002658), tuberous sclerosis (MESH:D014402), absence epilepsy (MESH:D004832), (Dup15q) syndrome (MESH:D013577), ASD (MESH:D000067877), congenital anomalies (MESH:D000013), monogenetic diseases (MESH:D004194), injuries (MESH:D014947), Prader-Willi (MESH:D011218), channelopathies (MESH:D053447), neurodevelopmental abnormalities (MESH:D063647), autistic tendencies (MESH:D001321), spinal muscular atrophy (MESH:D009134), chromosomal abnormalities (MESH:D002869), Huntington's Disease (MESH:D006816), neuropsychiatric disorders (MESH:D001523), Drooling (MESH:D012798), learning disabilities (MESH:D007859), refractory epilepsy (MESH:D000069279), IESS (MESH:D013036), weight gain (MESH:D015430), CNDD (MESH:D048090), focal epilepsy (MESH:D004828), DEE (MESH:C562695), status epilepticus (MESH:D013226), MCDs (MESH:C537834), hyperactivity (MESH:D006948), ion channel abnormalities (MESH:C538353), Seizure (MESH:D012640), LGS (MESH:D065768)
- **Chemicals:** ASM (-), Valproic acid (MESH:D014635), lamotrigine (MESH:D000077213), levetiracetam (MESH:D000077287), serotonin (MESH:D012701), Clobazam (MESH:D000078306)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12940370/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940370/full.md

---
Source: https://tomesphere.com/paper/PMC12940370