# Current Research Advances and Future Prospects on Microbial Consortia for Sustainable PFAS Remediation

**Authors:** Hafiz Abdul Kareem, Mohd Faheem Khan

PMC · DOI: 10.3390/ijms27042084 · International Journal of Molecular Sciences · 2026-02-23

## TL;DR

This paper reviews how microbial communities can help clean up harmful PFAS pollutants in soil and groundwater, offering sustainable alternatives to traditional methods.

## Contribution

The paper provides a comprehensive synthesis of recent advances in PFAS bioremediation using microbial consortia and proposes an integrated conceptual framework for field applications.

## Key findings

- Microbial consortia show promise for PFAS remediation through enzymatic pathways and cross-feeding interactions.
- Advances in metagenomics and machine learning are enabling the discovery of PFAS-degrading microbes and degradation mechanisms.
- Sustainable strategies like biochar-amended soils and bioelectrochemical systems enhance in situ PFAS biodegradation.

## Abstract

Soil contamination by per- and polyfluoroalkyl substances (PFAS) represents a pressing environmental and public health concern due to the exceptional persistence of carbon–fluorine bonds, which prevent natural attenuation and limit the effectiveness of conventional remediation. Agricultural and industrial soils serve as long-term sinks for PFAS, continuously releasing these pollutants into groundwater and facilitating their transfer through the food chain. Conventional chemical and physical remediation methods are often costly, energy-intensive, and yield incomplete removal, underscoring the need for sustainable and biologically driven alternatives. Microbial consortia have emerged as a promising solution due to their metabolic complementarities, cross-feeding interactions, and ecological resilience, which together enable PFAS transformation and partial defluorination under complex soil and subsurface conditions. Key enzymes such as oxygenases, reductive dehalogenases, and hydrolases are often operating within co-metabolic networks, which play central roles in these processes. Advances in metagenomics, CRISPR-based functional screening, and metabolic modelling are rapidly uncovering novel PFAS-degrading microbes and pathways. Integration of machine learning with multi-omics and environmental datasets further enables the prediction of degradation mechanisms, identification of keystone degraders, and rational design of synthetic consortia. Emerging sustainable strategies, including biochar- and nutrient-amended soil microcosms, plant–microbe partnerships for coupled soil–groundwater phytoremediation, and bioelectrochemical systems that offer new avenues for enhancing PFAS biodegradation in situ. This review synthesises recent research progress and provides critical perspectives on the mechanistic, ecological, and engineering dimensions of PFAS bioremediation, proposing an integrated conceptual framework linking microbial consortia dynamics, enzymatic pathways, and environmental engineering interventions to guide scalable field applications and sustainable management of PFAS-contaminated soil–groundwater ecosystems.

## Full-text entities

- **Genes:** SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase) [NCBI Gene 23049] {aka 61E3.4, ATX, LIP}, Oxygenase [NCBI Gene 4220433], RAPSN (receptor associated protein of the synapse) [NCBI Gene 5913] {aka CMS11, CMS4C, FADS, RAPSYN, RNF205}, CYP4F3 (cytochrome P450 family 4 subfamily F member 3) [NCBI Gene 4051] {aka CPF3, CYP4F, CYPIVF3, LTB4H}, Haloacid Dehalogenase [NCBI Gene 4223882], PFAS (phosphoribosylformylglycinamidine synthase) [NCBI Gene 5198] {aka FGAMS, FGAR-AT, FGARAT, GATD8, PURL}
- **Diseases:** toxicity (MESH:D064420), endocrine disruption (MESH:D004700), GSMM (MESH:C538175), injury to (MESH:D014947), reproductive and developmental toxicity (MESH:D060737), kidney and testicular cancers (MESH:D007680)
- **Chemicals:** ester (MESH:D004952), HF (MESH:D006858), Hydroxyapatite (MESH:D017886), TFA (MESH:D014269), monounsaturated fatty acids (MESH:D005229), C (MESH:D002244), fatty acid (MESH:D005227), hydrocarbons (MESH:D006838), calcium hydroxide (MESH:D002126), Perfluoropentanoic acid (MESH:C000619812), ammonium (MESH:D064751), methane (MESH:D008697), nitrogen (MESH:D009584), amino acids (MESH:D000596), difluoroacetate (MESH:C027495), Perfluoroheptanoic acid (MESH:C101815), fluorapatite (MESH:C025105), phosphorus (MESH:D010758), sulphate (MESH:D013431), oxygen (MESH:D010100), corrinoid (MESH:D045728), 6:2 FTAB (MESH:C000720152), Perfluorobutanoic Acid (MESH:C033094), 3,3,3-trifluoropropionic acid (-), calcium carbonate (MESH:D002119), PFNA (MESH:C101816), sulfur (MESH:D013455), methanol (MESH:D000432), glucose (MESH:D005947), MFA (MESH:C014815), cholesterol (MESH:D002784), malate (MESH:C030298), glyoxylate (MESH:C031150), PFOA (MESH:C023036), lime (MESH:C016538), aldehydes (MESH:D000447), alkanes (MESH:D000473), acetate (MESH:D000085), tryptophan (MESH:D014364), PFOS (MESH:C076994), HCl (MESH:D006851), Hydrogen (MESH:D006859), Biochar (MESH:C540010), 6:2 Fluorotelomer Sulfonic Acid (MESH:C000720117), calcium fluoride (MESH:D002124), 6:2 FTOH (MESH:C033729), iron (MESH:D007501), lipid (MESH:D008055), sulfonates (MESH:D000476), fluoride (MESH:D005459), cobalamin (MESH:D014805), PFHxA (MESH:C479228), B12 (MESH:C034730), tyrosine (MESH:D014443), phospholipids (MESH:D010743), water (MESH:D014867), CO2 (MESH:D002245), citrate (MESH:D019343), PFBS (MESH:C539348), propane (MESH:D011407)
- **Species:** Acinetobacter (genus) [taxon 469], Burkholderia (genus) [taxon 32008], Homo sapiens (human, species) [taxon 9606], Pseudomonas sp. (species) [taxon 306], Ectopseudomonas oleovorans (species) [taxon 301], Pseudomonas parafulva (species) [taxon 157782], Ralstonia (genus) [taxon 48736], Pseudomonas aeruginosa (species) [taxon 287], Sulfurospirillum (genus) [taxon 57665], Escherichia coli (E. coli, species) [taxon 562], Bacillus cereus (species) [taxon 1396], Variovorax (genus) [taxon 34072], Pseudomonas putida (species) [taxon 303], Thauera butanivorans (species) [taxon 86174], Acidimicrobium sp. (species) [taxon 1872112], Desulfovibrio aminophilus (species) [taxon 81425], Aciditerrimonas (genus) [taxon 1042325], Trametes versicolor (turkey-tail fungus, species) [taxon 5325], Cloacibacillus porcorum (species) [taxon 1197717], Cunninghamella elegans (species) [taxon 4853], Aspergillus (genus) [taxon 5052], Desulfosporosinus (genus) [taxon 79206], Bacteroidia (class) [taxon 200643], Gordonia sp. (in: high G+C Gram-positive bacteria) (species) [taxon 84139], Sphingomonas (genus) [taxon 13687], Sporomusa sphaeroides (species) [taxon 47679], Serratia marcescens (species) [taxon 615], Rhodococcus jostii RHA1 (strain) [taxon 101510], Alternaria sect. Alternaria (section) [taxon 2499237]

## Full text

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## Figures

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## References

140 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940359/full.md

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Source: https://tomesphere.com/paper/PMC12940359