# Behavioral Features in Phelan–McDermid Syndrome: Characteristics and Genetic and Metabolic Contributions in a Cohort of 56 Individuals

**Authors:** Emily Payne, Bridgette A. Moffitt, Lindsay M. Oberman, Laura Beamer, Sujata Srikanth, Lauren Nicole Cascio, Kelly Jones, Lavanya Jain, Rini Pauly, Melanie May, Cindy Skinner, Carrie Buchanan, Barbara G. DuPont, Rebekah R. Martin, R. Curtis Rogers, Katy Phelan, Sara M. Sarasua, Walter E. Kaufmann, Luigi Boccuto

PMC · DOI: 10.3390/genes17020202 · 2026-02-08

## TL;DR

This study examines the behavioral features and genetic/metabolic factors in 56 individuals with Phelan–McDermid syndrome, a rare neurodevelopmental disorder.

## Contribution

The study identifies SHANK3's role in adaptive behavior and reveals distinct metabolic profiles linked to behavioral outcomes in PMS.

## Key findings

- Individuals with SHANK3 variants had lower adaptive behavioral skills than those with 22q13 deletions.
- Metabolic profiling showed unique patterns in PMS individuals compared to controls and based on ASD cutoff scores.
- Cluster analyses identified groups with distinct ASD and clinical features.

## Abstract

Background/Objectives: Phelan–McDermid syndrome (PMS), caused by either chromosome 22q13.3 deletions or pathogenic/likely pathogenic variants in the SHANK3 gene, is a rare neurodevelopmental disorder. Behavioral issues greatly impair the quality of life for affected individuals and their families. This genotype–phenotype study intended to further characterize key behavioral features and their genetic and metabolic correlates in PMS. Methods: We conducted a cross-sectional analysis of data on 56 individuals with PMS. Autistic and related behaviors were assessed with the Autism Diagnosis Interview—Revised (ADI-R) and adaptive behavior skills were assessed with the Vineland Adaptive Behavior Scales-Third Edition (Vineland-3), both covering multiple aspects of communication, socialization and abnormal behaviors. Genetic diagnostic information on deletions or pathogenic variants was supplemented with the sequencing data of nine candidate genes on 22q13.3. Metabolic data were obtained using the Biolog Phenotype Mammalian MicroArray plates (PM-M). Results. Every subject in the cohort presented either prominent autistic behavior or adaptive behavior impairment, 55.4% of them meeting the ASD cutoff in every ADI-R domain and 92.9% scoring in the lowest level of adaptive behavior (range of 20–70). Individuals with SHANK3 variants had lower adaptive behavioral skills than those with 22q13 deletions regardless of deletion size, while genomic parameters were largely unrelated to ADI-R scores. Metabolic profiling identified unique profiles of individuals with PMS compared with controls, while distinct profiles distinguished those who met or did not meet the ADI-R ASD cutoff. Cluster analyses revealed groups of individuals with ASD and other clinical features. Conclusion. This study highlighted the importance of SHANK3 in adaptive behavioral skills and uncovered potential metabolic biomarkers of therapeutic relevance.

## Linked entities

- **Genes:** SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358]
- **Diseases:** Phelan–McDermid syndrome (MONDO:0011652), autism spectrum disorder (MONDO:0005258)

## Full-text entities

- **Genes:** LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549] {aka FEX, GPR49, GPR67, GRP49, HG38}, MAPK8IP2 (mitogen-activated protein kinase 8 interacting protein 2) [NCBI Gene 23542] {aka IB-2, IB2, JIP2, PRKM8IPL}, RABL2B (RAB, member of RAS oncogene family like 2B) [NCBI Gene 11158], PIM3 (Pim-3 proto-oncogene, serine/threonine kinase) [NCBI Gene 415116] {aka pim-3}, ALG12 (ALG12 alpha-1,6-mannosyltransferase) [NCBI Gene 79087] {aka CDG1G, ECM39, PP14673, hALG12}, ARHGAP8 (Rho GTPase activating protein 8) [NCBI Gene 23779] {aka BPGAP1, PP610}, MIR1249 (microRNA 1249) [NCBI Gene 100302149] {aka MIRN1249, hsa-mir-1249}, PNPLA3 (patatin like domain 3, 1-acylglycerol-3-phosphate O-acyltransferase) [NCBI Gene 80339] {aka ADPN, C22orf20, iPLA(2)epsilon}, SULT4A1 (sulfotransferase family 4A member 1) [NCBI Gene 25830] {aka BR-STL-1, BRSTL1, DJ388M5.3, NST, SULTX3, hBR-STL-1}, SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358] {aka DEL22q13.3, PROSAP2, PSAP2, SCZD15, SPANK-2}
- **Diseases:** social communication and interaction impairments (MESH:D000067404), gastrointestinal issues (MESH:D005767), intellectual disability (MESH:D008607), rare disorder (MESH:D035583), neonatal hypotonia (MESH:D009123), adaptive behavior impairment (MESH:D018489), difficulties with social and communication skills (MESH:D003147), developmental delay (MESH:D002658), restricted and repetitive behaviors (MESH:D002313), PMS (MESH:C536801), impulsive behavior (MESH:D010554), PM-M3 (MESH:D015473), anxiety (MESH:D001007), ASD (MESH:D001321), disruptive behavior (MESH:D019958), ADI-R (MESH:D001523), Sleep Disturbances (MESH:D012893), ASD (MESH:D000067877), dysmorphic features (MESH:D000013), injury to (MESH:D014947), metabolic abnormalities (MESH:D008659), Seizures (MESH:D012640), genetic abnormalities (MESH:D030342), PM-M1 (MESH:D015470), neurological and behavioral abnormalities (MESH:D009461), self-injury (MESH:D012652), neurobehavioral impairments (MESH:D019954)
- **Chemicals:** arginine (MESH:D001120), carbohydrate (MESH:D002241), D-glucosaminic acid (MESH:C035547), amino acid (MESH:D000596), aspartate (MESH:D001224), D, L-a-hydroxy-butyric acid (-), L-fucose (MESH:D005643), L-tryptophan (MESH:D014364), NADH (MESH:D009243), potassium chloride (MESH:D011189), L-glutamine (MESH:D005973), alanine (MESH:D000409), streptomycin (MESH:D013307), potassium chromate (MESH:C027373), carboxylic acid (MESH:D002264), sodium chloride (MESH:D012965), D-mannose (MESH:D008358), adenosine (MESH:D000241), magnesium chloride (MESH:D015636), inosine (MESH:D007288), D-galactose (MESH:D005690), dipeptides (MESH:D004151), ketone bodies (MESH:D007657), Gly-Thr (MESH:C061951), glutamate (MESH:D018698), Trp-Gly (MESH:C016810), sodium tungstate (MESH:C025399), nucleotides (MESH:D009711), sodium nitrate (MESH:C031618)
- **Species:** Homo sapiens (human, species) [taxon 9606], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940330/full.md

---
Source: https://tomesphere.com/paper/PMC12940330