# Nonsense Mutation in USH2A Exon-13 Activates the Innate Immune Response in Müller Glial Cells

**Authors:** Rossella Valenzano, Xuefei Lu, Andrew McDonald, Ioannis Moustakas, Roberta Menafra, Aat A. Mulder, Roman I. Koning, Susan L. Kloet, Jun Yang, Hailiang Mei, Jan Wijnholds

PMC · DOI: 10.3390/ijms27041636 · 2026-02-07

## TL;DR

A mutation in the USH2A gene causes retinal degeneration by triggering immune responses in glial cells, not directly harming photoreceptors.

## Contribution

This study reveals that Müller glial cells, not photoreceptors, are primarily affected by a USH2A mutation, suggesting new therapeutic targets.

## Key findings

- A nonsense mutation in USH2A exon-13 disrupts usherin localization but spares photoreceptor development.
- Müller glial cells show significant transcriptional changes in translation, immune response, and endolysosomal systems.
- The findings suggest Müller glial cells may drive disease progression in Usher syndrome.

## Abstract

Pathological USH2A mutations cause Usher syndrome type II, characterized by progressive retinitis pigmentosa and hearing and balance impairment. This study aims to investigate the cellular mechanisms underlying USH2A-related retinal degeneration using human induced pluripotent stem cell (hiPSC)-derived retinal organoids. The introduction of a homozygous nonsense mutation in the USH2A hotspot exon-13 resulted in normal photoreceptor development but loss of ciliary localization of usherin long form B and its interacting proteins, ADGRV1 and whirlin. Notably, single-cell RNA sequencing revealed unexpected significant transcriptional changes in Müller glial cells (MGCs), suggestive of disruptions in the translation, innate immune response, and endolysosomal system. These findings suggest that, while photoreceptor cells are mildly affected by the exon-13 USH2A mutation, MGCs exhibit major transcriptional changes, potentially contributing to the disease progression and therefore shedding light on potential alternative therapeutic targets.

## Linked entities

- **Genes:** USH2A (usherin) [NCBI Gene 7399], ADGRV1 (adhesion G protein-coupled receptor V1) [NCBI Gene 84059]
- **Proteins:** PDZD7 (PDZ domain containing 7)
- **Diseases:** retinitis pigmentosa (MONDO:0008377)

## Full-text entities

- **Genes:** F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, Rho (rhodopsin) [NCBI Gene 212541] {aka Noerg1, Opn2, Ops, RP4}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, USH2A (usherin) [NCBI Gene 7399] {aka RP39, US2, USH2, dJ1111A8.1}, MYO6 (myosin VI) [NCBI Gene 4646] {aka DFNA22, DFNB37}, ONECUT1 (one cut homeobox 1) [NCBI Gene 3175] {aka HNF-6, HNF6, HNF6A}, SEC11C (SEC11 homolog C, signal peptidase complex subunit) [NCBI Gene 90701] {aka SEC11L3, SPC21, SPCS4C}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, Ush2a (usherin) [NCBI Gene 22283] {aka A930011D15Rik, A930037M10Rik, Gm676, Gm983, Mush2a, Ushrn}, IFNA2 (interferon alpha 2) [NCBI Gene 3440] {aka IFN-alpha-2, IFN-alphaA, IFNA, IFNA2B, leIF A}, Adgrv1 (adhesion G protein-coupled receptor V1) [NCBI Gene 110789] {aka Frings, Gpr98, Mass1, Mgr1, VLGR1}, Ush1c (USH1 protein network component harmonin) [NCBI Gene 72088] {aka 2010016F01Rik, harmonin}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, ARL13A (ARF like GTPase 13A) [NCBI Gene 392509] {aka ARL13, dJ341D10.2}, ADGRV1 (adhesion G protein-coupled receptor V1) [NCBI Gene 84059] {aka FEB4, GPR98, MASS1, USH2B, USH2C, VLGR1}, Ush1g (USH1 protein network component sans) [NCBI Gene 16470] {aka Sans, js}, NIM1K (NIM1 serine/threonine protein kinase) [NCBI Gene 167359] {aka NIM1}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, Whrn (whirlin) [NCBI Gene 73750] {aka 1110035G07Rik, C430046P22Rik, Dfnb31, Ush2d, wi}, GNAT1 (G protein subunit alpha transducin 1) [NCBI Gene 2779] {aka CSNB1G, CSNBAD3, GBT1, GNATR, HG1F}, IFITM3 (interferon induced transmembrane protein 3) [NCBI Gene 10410] {aka 1-8U, DSPA2b, IP15}, ASIC2 (acid sensing ion channel subunit 2) [NCBI Gene 40] {aka ACCN, ACCN1, ASIC2a, BNC1, BNaC1, MDEG}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PDE6A (phosphodiesterase 6A) [NCBI Gene 5145] {aka CGPR-A, PDEA, RP43}, TUBB4B (tubulin beta 4B class IVb) [NCBI Gene 10383] {aka Beta2, LCAEOD, TUBB2, TUBB2C}, PDE6G (phosphodiesterase 6G) [NCBI Gene 5148] {aka PDEG, RP57}, HSPA1A (heat shock protein family A (Hsp70) member 1A) [NCBI Gene 3303] {aka HEL-S-103, HSP70, HSP70-1, HSP70-1A, HSP70-2, HSP70.1}, ROM1 (retinal outer segment membrane protein 1) [NCBI Gene 6094] {aka ROM, ROSP1, RP7, TSPAN23}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, PSKH2 (protein serine kinase H2) [NCBI Gene 85481], B2M (beta-2-microglobulin) [NCBI Gene 567] {aka AMYLD6, IMD43, MHC1D4}, WHRN (whirlin) [NCBI Gene 25861] {aka CIP98, DFNB31, PDZD7B, USH2D, WI}, ANO6 (anoctamin 6) [NCBI Gene 196527] {aka BDPLT7, SCTS, TMEM16F}, ARL13B (ARF like GTPase 13B) [NCBI Gene 200894] {aka ARL2L1, JBTS8}, ARHGAP35 (Rho GTPase activating protein 35) [NCBI Gene 2909] {aka GRF-1, GRLF1, P190-A, P190A, p190ARhoGAP, p190RhoGAP}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, DYNC1I1 (dynein cytoplasmic 1 intermediate chain 1) [NCBI Gene 1780] {aka DNCI1, DNCIC1}, SAG (S-antigen visual arrestin) [NCBI Gene 6295] {aka RP47, RP96, S-AG}, CC2D2A (coiled-coil and C2 domain containing 2A) [NCBI Gene 57545] {aka COACH2, JBTS9, MKS6, RP93}, UBB (ubiquitin B) [NCBI Gene 7314] {aka HEL-S-50}, COMT (catechol-O-methyltransferase) [NCBI Gene 1312] {aka HEL-S-98n}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, HLA-B (major histocompatibility complex, class I, B) [NCBI Gene 3106] {aka AS, B-4901, HLAB}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, FXYD1 (FXYD domain containing ion transport regulator 1) [NCBI Gene 5348] {aka PLM}, ARR3 (arrestin 3) [NCBI Gene 407] {aka ARRX, MYP26, cArr}, CEBPD (CCAAT enhancer binding protein delta) [NCBI Gene 1052] {aka C/EBP-delta, CELF, CRP3, NF-IL6-beta}, THY1 (Thy-1 cell surface antigen) [NCBI Gene 7070] {aka CD90, CDw90}, IFITM2 (interferon induced transmembrane protein 2) [NCBI Gene 10581] {aka 1-8D, DSPA2c}
- **Diseases:** viral infection (MESH:D014777), gliosis (MESH:D005911), Usher 1C disease (MESH:C536486), retinal degeneration (MESH:D012162), infection (MESH:D007239), retinal disease (MESH:D012164), MGCs (MESH:D009081), Usher syndrome (MESH:D052245), USH2 syndrome (MESH:D013577), injury to (MESH:D014947), inflammatory (MESH:D007249), RP (MESH:D012174), MGC (MESH:D006627), hearing and balance impairment (MESH:D034381), autosomal recessive disorder (MESH:D030342)
- **Chemicals:** retinoic acid (MESH:D014212), blebbistatin (MESH:C472645), DD16 (-), cGAMP (MESH:C584311), agarose (MESH:D012685), LPS (MESH:D008070), sucrose (MESH:D013395), paraformaldehyde (MESH:C003043), PBS (MESH:D007854), oligonucleotides (MESH:D009841)
- **Species:** Danio rerio (leopard danio, species) [taxon 7955], Mesocricetus auratus (golden hamster, species) [taxon 10036], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Macaca (macaque, genus) [taxon 9539]
- **Mutations:** Cys759Phe, p.(Gln867*), c.2553_2554insTAGT, 2299delG, 2512 C>T, 2314delG, c.2610 C>A, 2661 C>A, 2440 C>T, cysteine with a phenylalanine, Glu771Ter, 2599 C>T, c.2541 C>A, 2554insTAGT, c.2431 A>T, c.2431_2432_del, p.(Thr852*), c.2310del
- **Cell lines:** ISO-CTRL — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_WN11), ISO — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_A8PP), LUMC0004iCTRL10 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_ZA10)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940303/full.md

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Source: https://tomesphere.com/paper/PMC12940303