# Discovery of Obacunone as a TGR5 Agonist from Rhizoma coptidis: Affinity Screening, Functional Verification and Transcriptional Analysis

**Authors:** Gaojie Fu, Maoting Liu, Zenghao Bi, Jing Mo, Liang Leng, Dan Sun, Shilin Chen

PMC · DOI: 10.3390/ijms27041947 · 2026-02-18

## TL;DR

This study identifies obacunone in Rhizoma coptidis as a TGR5 agonist, offering insights into its role in metabolic regulation and potential therapeutic use.

## Contribution

The study introduces obacunone as a novel TGR5 agonist from Rhizoma coptidis, validated through multiple experimental techniques.

## Key findings

- Obacunone was identified as a TGR5 agonist with a KD of 101 μM and EC50 of 9.6 μM.
- Transcriptomic analysis showed HMOX1 as the most significantly upregulated gene in response to obacunone.

## Abstract

Rhizoma coptidis (RC), known as Huang Lian, is widely used for treating diabetes in Traditional Chinese Medicine. G protein-coupled bile acid receptor 1 (TGR5) is a potential therapeutic target for glucose-lipid metabolic disorders due to its capacity to stimulate glucagon-like peptide-1 (GLP-1) secretion. However, whether RC contains ingredients targeting TGR5 remains unclear. In this study, we screened 330 secondary metabolites of RC via molecular docking and identified obacunone as a top candidate. We confirmed binding using Cell Membrane Chromatography (CMC) and quantified affinity via Surface Plasmon Resonance (SPR), determining a KD of 101 μM. cAMP assays identified obacunone as an activator of TGR5. Subsequently, concentration-dependent cAMP assays characterized it as a partial agonist with an EC50 of 9.6 μM. Finally, transcriptomic profiling revealed a stress adaptation response, identifying Heme Oxygenase 1 (HMOX1) as the most significantly upregulated gene (padj = 9.99 × 10−72, log2FoldChange = 1.65). These findings contribute to understanding the pharmacological profile of RC and provide a screening example for identifying components with GPCR activity in RC.

## Linked entities

- **Genes:** HMOX1 (heme oxygenase 1) [NCBI Gene 3162]
- **Proteins:** GPBAR1 (G protein-coupled bile acid receptor 1), GCG (glucagon)
- **Chemicals:** obacunone (PubChem CID 119041)
- **Diseases:** diabetes (MONDO:0005015)

## Full-text entities

- **Genes:** PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, CAMP (cathelicidin antimicrobial peptide) [NCBI Gene 820] {aka CAP-18, CAP18, CRAMP, FALL-39, FALL39, HSD26}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, OXER1 (oxoeicosanoid receptor 1) [NCBI Gene 165140] {aka GPCR, GPR170, TG1019}, SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657] {aka CCBR1, xCT}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}, DIO2 (iodothyronine deiodinase 2) [NCBI Gene 1734] {aka 5DII, D2, DIOII, SELENOY, SelY, TXDI2}, GPBAR1 (G protein-coupled bile acid receptor 1) [NCBI Gene 151306] {aka BG37, GPCR19, GPR131, M-BAR, TGR5}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562] {aka AMPK, AMPK alpha 1, AMPKa1}, GCLM (glutamate-cysteine ligase modifier subunit) [NCBI Gene 2730] {aka GLCLR}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, PAGR1 (PAXIP1 associated glutamate rich protein 1) [NCBI Gene 79447] {aka C16orf53, GAS, PA1}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}
- **Diseases:** simple steatosis to (MESH:D005234), CMC (MESH:D015433), obesity (MESH:D009765), TCM (MESH:C562377), Wasting-Thirst Syndrome (MESH:D019282), metabolic diseases (MESH:D008659), inflammatory (MESH:D007249), injury to (MESH:D014947), hyperglycemia (MESH:D006943), fibrosis (MESH:D005355), hyperglycemic (MESH:D006944), mitochondrial dysfunction (MESH:D028361), muscle hypertrophy (MESH:C536106), NAFLD (MESH:D065626), Endocrine and Metabolic Diseases (MESH:D004700), diabetes (MESH:D003920), insulin resistance (MESH:D007333)
- **Chemicals:** water (MESH:D014867), ATP (MESH:D000255), CO2 (MESH:D002245), lactone (MESH:D007783), lipid (MESH:D008055), agarose (MESH:D012685), terpenoids (MESH:D013729), PBS (MESH:D007854), sodium acetate (MESH:D019346), Hydrogen (MESH:D006859), alkaloids (MESH:D000470), T3 (MESH:D014284), DMSO (MESH:D004121), polyketides (MESH:D061065), glucose (MESH:D005947), cyclic AMP (MESH:D000242), CAS (MESH:D002118), Berberine (MESH:D001599), ROS (MESH:D017382), EDC (MESH:C024565), limonoids (MESH:D036701), Chemicals and Reagents (-), GTP (MESH:D006160), fat (MESH:D005223), T4 (MESH:D013974), saline (MESH:D012965), bile acids (MESH:D001647), methanol (MESH:D000432), furan (MESH:C039281), Obacunone (MESH:C067207), silica (MESH:D012822), penicillin (MESH:D010406), puromycin (MESH:D011691), INT-777 (MESH:C545501), Lipofectamine (MESH:C086724), shikimates (MESH:C000723335), D-luciferin (MESH:C532924), IP (MESH:C041508), amine (MESH:D000588), triterpenoid (MESH:D014315), Limonin (MESH:C001546), fatty acids (MESH:D005227), streptomycin (MESH:D013307), CA (MESH:D019826)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HEK293T-TGR5 — Homo sapiens (Human), Transformed cell line (CVCL_B3AU), NCI-H716 — Homo sapiens (Human), Cecum adenocarcinoma, Cancer cell line (CVCL_1581), TGR5 — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_T955), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), STC-1 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_3171), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940286/full.md

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Source: https://tomesphere.com/paper/PMC12940286