# Identification of Neferine as a DOR Agonist Activating Gi and Gz Signaling: In Silico and In Vitro Studies

**Authors:** Zenghao Bi, Yuting Liang, Xinyu Tang, Yun Shu, Zhuangyuan Xie, Guoqing Xu, Jing Mo, Pang Jit Seng, Yifan Qing, Zhaotong Cong, Liang Leng, Shilin Chen

PMC · DOI: 10.3390/ijms27042058 · 2026-02-23

## TL;DR

Neferine, a natural compound, was found to activate the delta-opioid receptor, potentially offering neuroprotection and regeneration benefits.

## Contribution

Neferine is identified as a novel delta-opioid receptor agonist through combined computational and experimental approaches.

## Key findings

- Neferine activates Gi2, Gi3, and Gz signaling through DOR modulation.
- Neferine inhibits cAMP accumulation with an EC50 of 0.25 µM.
- Transcriptomic analysis showed neferine affects cell cycle and stress adaptation genes.

## Abstract

Benzylisoquinoline alkaloids (BIAs) exhibit diverse biological activities, such as neuroprotective effects. The delta-opioid receptor (DOR) has emerged as a promising therapeutic target due to its potential role in enhancing neuroprotection and regeneration. However, reports on the binding of BIAs to the DOR remain scarce. Here, neferine, a BIA from Nelumbo nucifera, as a potential DOR agonist. Molecular docking ranked neferine among the top of 15 BIAs. Initial binding was detected by cellular membrane chromatography and quantitatively confirmed by bio-layer interferometry, with a KD value of 37.4 μM. ONE vector G protein Optical biosensor revealed that Gi2, Gi3 and GZ signaling could be activated by neferine through DOR modulation. Consistent with the Gi/z activation, neferine dose-dependently inhibited cAMP accumulation with an EC50 of 0.25 µM. Transcriptomic analysis in DOR-overexpressing HEK293T cells indicated that neferine stimulation predominantly regulates gene networks governing cell cycle and stress adaptation. However, direct transcriptional signature for neuroprotection was not predominant in our system, suggesting that DOR signaling may exhibit context-dependent effects. In conclusion, we identified the neferine as a natural DOR agonist through in silico and in vitro approach, providing a reference for further investigation into its pharmacological potential.

## Linked entities

- **Genes:** OPRD1 (opioid receptor delta 1) [NCBI Gene 4985], gnai2 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2) [NCBI Gene 394861], LOC100781641 (protein GIGANTEA) [NCBI Gene 100781641], Gnaz (guanine nucleotide binding protein, alpha z subunit) [NCBI Gene 14687]
- **Chemicals:** neferine (PubChem CID 159654)
- **Species:** Nelumbo nucifera (taxon 4432)

## Full-text entities

- **Genes:** GNAI1 (G protein subunit alpha i1) [NCBI Gene 2770] {aka Gi, HG1B, NEDHISB}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, VN1R17P (vomeronasal 1 receptor 17 pseudogene) [NCBI Gene 441931] {aka GPCR}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, TP53INP2 (tumor protein p53 inducible nuclear protein 2) [NCBI Gene 58476] {aka C20orf110, DOR, PINH, dJ1181N3.1}, TRIM47 (tripartite motif containing 47) [NCBI Gene 91107] {aka GOA, RNF100}
- **Diseases:** inflammatory (MESH:D007249), injury to (MESH:D014947), neurodegenerative diseases (MESH:D019636), viral infections (MESH:D014777), cancer (MESH:D009369), ischemic stroke (MESH:D002544), neuroinflammation (MESH:D000090862), neurological disorders (MESH:D009461)
- **Chemicals:** Neferine (MESH:C057222), BIA (-), H2O2 (MESH:D006861), saline (MESH:D012965), SiO2 (MESH:D012822), TCEP (MESH:C080938), HEPES (MESH:D006531), penicillin (MESH:D010406), Forskolin (MESH:D005576), amino acids (MESH:D000596), EDTA (MESH:D004492), Pronuciferine (MESH:C514305), C (MESH:D002244), streptomycin (MESH:D013307), cepharanthine (MESH:C006947), ATP (MESH:D000255), CO2 (MESH:D002245), lipopolysaccharide (MESH:D008070), TRIzol (MESH:C411644), KCl (MESH:D011189), Nuciferine (MESH:C008692), DMSO (MESH:D004121), cAMP (MESH:D000242), ROS (MESH:D017382)
- **Species:** Homo sapiens (human, species) [taxon 9606], Nelumbo nucifera (Indian lotus, species) [taxon 4432], Gammacoronavirus (genus) [taxon 694013]
- **Cell lines:** 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), BV-2 — Mus musculus (Mouse), Transformed cell line (CVCL_0182)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940200/full.md

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Source: https://tomesphere.com/paper/PMC12940200