# Nuclear and Mitochondrial Epigenetic Mechanisms Underlying Neurodegeneration and Gut–Brain Axis Dysregulation Induced by Micro- and Nanoplastics

**Authors:** Dragica Pavlovic, Dragana Papic, Vladimir Janjic, Marina Mitrovic, Milica Dimitrijevic Stojanovic, Marina Gazdic Jankovic

PMC · DOI: 10.3390/genes17020151 · 2026-01-28

## TL;DR

This review explores how micro- and nanoplastics may harm the gut-brain axis and cause neurodegeneration through epigenetic changes.

## Contribution

The paper integrates preclinical and human evidence to propose a model linking plastic exposure to epigenetic changes and neurodegeneration.

## Key findings

- MPs/NPs disrupt gut microbiota and intestinal barrier integrity.
- Exposure to MPs/NPs reprograms nuclear and mitochondrial epigenetics in gut, immune, and neural cells.
- Plastic exposure converges on oxidative stress and neuroinflammatory pathways in neurodegenerative diseases.

## Abstract

The increasing and global distribution of microplastics and nanoplastics (MPs/NPs) in the environment has led to concern about their potential influence on human health, especially on the gastrointestinal tract, as well as the brain. MPs/NPs could traverse epithelial and endothelial barriers, disrupt the gut microbiota, and perturb the microbiota–gut–brain axis, leading to systemic inflammation and possibly extending neurodegenerative processes. Experimental models now demonstrate that MPs/NPs reprogram nuclear and mitochondrial epigenetics—DNA methylation, histone modifications, non-coding RNAs, and mitochondrial DNA regulation—in gut, immune, and neural cells with downstream effects on synaptic function, neuronal survival, and protein aggregation. This mechanistic narrative review integrates preclinical and emerging human evidence of how MPs/NPs compromise intestinal barrier integrity, modulate gut microbiota composition, affect the blood–brain barrier, and converge on oxidative stress, neuroinflammatory signaling, and cell death pathways within the central nervous system across key neurodegenerative diseases. Overall, the review offers an integrated model in which environmental exposure to chronic MPs/NPs disrupts the microbiota–gut–brain axis and drives concurrent nuclear and mitochondrial epigenetic remodeling, lowering the threshold for neurodegeneration in susceptible individuals, while outlining candidate mechanistic readouts that require exposure-specific validation in human-relevant models and longitudinal cohorts.

## Full-text entities

- **Genes:** CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, Adcyap1 (adenylate cyclase activating polypeptide 1) [NCBI Gene 11516] {aka PACAP}, MIR155 (microRNA 155) [NCBI Gene 406947] {aka MIRN155, miRNA155, mir-155}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, CASP9 (caspase 9) [NCBI Gene 842] {aka APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, FADD (Fas associated via death domain) [NCBI Gene 8772] {aka GIG3, IMD90, MORT1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, GCLC (glutamate-cysteine ligase catalytic subunit) [NCBI Gene 2729] {aka CNSHA7, GCL, GCS, GLCL, GLCLC}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, GSDMD (gasdermin D) [NCBI Gene 79792] {aka DF5L, DFNA5L, FKSG10, GSDMDC1}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, pink-1 (Serine/threonine-protein kinase pink-1, mitochondrial) [NCBI Gene 173918], DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789] {aka FSHD4, ICF, ICF1, M.HsaIIIB}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, SERPINH1 (serpin family H member 1) [NCBI Gene 871] {aka AsTP3, CBP1, CBP2, HSP47, OI10, PIG14}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, CSF3 (colony stimulating factor 3) [NCBI Gene 1440] {aka C17orf33, CSF3OS, GCSF}, HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, IRF5 (interferon regulatory factor 5) [NCBI Gene 3663] {aka SLEB10}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, FASLG (Fas ligand) [NCBI Gene 356] {aka ALPS1B, APT1LG1, APTL, CD178, CD95-L, CD95L}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, NR1I2 (nuclear receptor subfamily 1 group I member 2) [NCBI Gene 8856] {aka BXR, ONR1, PAR, PAR1, PAR2, PARq}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, KDM1A (lysine demethylase 1A) [NCBI Gene 23028] {aka AIMAH3, AOF2, BHC110, CPRF, KDM1, LSD1}, PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, sod-1 (Superoxide dismutase) [NCBI Gene 174141], GCLM (glutamate-cysteine ligase modifier subunit) [NCBI Gene 2730] {aka GLCLR}, Camk2g (calcium/calmodulin-dependent protein kinase II gamma) [NCBI Gene 12325] {aka Camkg}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, skn-1 (BZIP domain-containing protein;Protein skinhead-1) [NCBI Gene 177343], IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524] {aka CCRL1, CMKBRL1, CMKDR1, GPR13, GPRV28, V28}, NOS3 (nitric oxide synthase 3) [NCBI Gene 4846] {aka EC-NOS, ECNOS, MYMY8, NOSIII, cNOS, eNOS}, HSPB1 (heat shock protein family B (small) member 1) [NCBI Gene 3315] {aka CMT2F, HEL-S-102, HMN2B, HMND3, HS.76067, HSP27}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, SETD2 (SET domain containing 2, histone lysine methyltransferase) [NCBI Gene 29072] {aka HBP231, HIF-1, HIP-1, HSPC069, HYPB, KMT3A}, ACHE (acetylcholinesterase (Yt blood group)) [NCBI Gene 43] {aka ACEE, ARACHE, N-ACHE, YT}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}
- **Diseases:** stroke (MESH:D020521), Neuronal and Synaptic Injury (MESH:D012183), neuronal dysfunction (MESH:D009461), PD (MESH:D010300), mitochondrial damage (MESH:D028361), injury to (MESH:D014947), Neurodegeneration (MESH:D019636), Inflammatory (MESH:D007249), Lewy body (MESH:D020961), Neuroinflammation (MESH:D000090862), BBB dysfunction (MESH:C536830), Gut Dysbiosis (MESH:D064806), HD (MESH:D006816), AD (MESH:D000544), Neurotoxicity (MESH:D020258), dementia (MESH:D003704), IBD (MESH:D015212), neuronal death (MESH:D009410), ALS (MESH:D008113), nervous system dysfunction (MESH:D009422), cognitive decline (MESH:D003072), brain tissue damage (MESH:D017695), synaptic dysfunction (MESH:C536122), MS (MESH:D009103), atherosclerotic (MESH:D050197), brain injury (MESH:D001930), phenotypes (MESH:C537393), amyotrophic lateral sclerosis (MESH:D000690), vascular dysfunction (MESH:D002561), cytotoxicity (MESH:D064420), gastrointestinal barrier dysfunction (MESH:D005767), myocardial infarction (MESH:D009203)
- **Chemicals:** bisphenol A (MESH:C006780), PMMA (MESH:D019904), water (MESH:D014867), cAMP (MESH:D000242), PE (MESH:D020959), nitric oxide (MESH:D009569), glutamate (MESH:D018698), GABA (MESH:D005680), acridine orange (MESH:D000165), polyamide (MESH:D009757), LPO (MESH:D008054), polymer (MESH:D011108), MPs (MESH:C063925), PP (MESH:D011126), LPS (MESH:D008070), lipid (MESH:D008055), GSH (MESH:D005978), PS (MESH:D011137), ATP (MESH:D000255), SCFA (MESH:D005232), MP (MESH:D000080545), ROS (MESH:D017382), serotonin (MESH:D012701), NPs (MESH:D009405), indole (MESH:C030374), tryptophan (MESH:D014364), PET (MESH:D011093), dopamine (MESH:D004298), bile acids (MESH:D001647), NO (MESH:D009614), H3K4 (-), PVC (MESH:D011143), MDA (MESH:D008315), propionate (MESH:D011422), polyesters (MESH:D011091), butyrate (MESH:D002087)
- **Species:** C. elegans [taxon 328850], Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239], Pimephales promelas (fathead minnow, species) [taxon 90988], gut metagenome (species) [taxon 749906], Actinopterygii (fishes, superclass) [taxon 7898], Gallus gallus (bantam, species) [taxon 9031], Danio rerio (leopard danio, species) [taxon 7955], Coturnix japonica (Japanese quail, species) [taxon 93934], Homo sapiens (human, species) [taxon 9606], Clostridium (genus) [taxon 1485], Rodentia (rodent, order) [taxon 9989], Bacteroides (genus) [taxon 816], Rattus norvegicus (brown rat, species) [taxon 10116], Staphylococcus (genus) [taxon 1279]
- **Cell lines:** hNS1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), MTX-E12 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_G356), SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), HT29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940196/full.md

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Source: https://tomesphere.com/paper/PMC12940196