# The living medicine inside us: in vitro therapeutic prospects of human gut bacteria

**Authors:** K. M. Salim Andalib, Fabliha Bashashat Rodosy, Ahsan Habib

PMC · DOI: 10.1080/29933935.2025.2480093 · 2025-04-03

## TL;DR

This study explores gut bacteria metabolites for their potential to act as antioxidants, antimicrobials, and anticoagulants, suggesting new therapeutic applications.

## Contribution

The study identifies specific gut bacteria metabolites with strong therapeutic potential, including anti-microbial and anti-thrombotic properties.

## Key findings

- Metabolic extracts from all isolates showed strong antioxidant activity.
- Metabolites from Lactobacillus rhamnosus, Priestia flexa, and Bacillus subtilis inhibited pathogenic bacterial strains.
- Escherichia fergusonii metabolites were most effective in lysing blood clots compared to streptokinase.

## Abstract

Gut microbial metabolism is intimately coupled to host health and disease. Recent knowledge on potential health benefits of gut microbiome lays the groundwork for development of novel therapeutic strategies. But how microbiota-derived metabolites impact on host-microbiome crosstalk remains untapped from therapeutic perspectives. In this study, six gut bacteria sourced from a fecal pool of forty healthy donors were cultured in three distinct growth media. Subsequently, the bacteria were identified through 16S rRNA gene sequencing and subjected to metabolite extraction to evaluate their anti-microbial, anti-oxidant and anti-thrombotic potential. Findings reveal strong anti-oxidant activities in the metabolic-extracts from all the isolates. Metabolites derived from Lactobacillus rhamnosus, Priestia flexa and Bacillus subtiilis inhibited the growth of clinically pathogenic strains Escherichia coli ATCC-8739, Salmonella typhi ATCC-1408 and Staphylococcus aureus ATCC-6538. Escherichia fergusonii originated metabolites demonstrated the highest efficacy in lysing blood clots compared to streptokinase. Additionally, extracts from all the isolates exhibited significant ability to delay coagulation time, competing with standard warfarin. Thus, the findings of our early-stage study provide novel insights into metabolomic functions of gut microbiota. This study underscores the significance of exploring these active metabolites for prospective therapeutic and clinical exploration at the intersection of drug discovery and live bio-therapeutics.

## Linked entities

- **Species:** Priestia flexa (taxon 86664), Bacillus subtilis (taxon 1423), Escherichia coli (taxon 562), Staphylococcus aureus (taxon 1280), Escherichia fergusonii (taxon 564)

## Full-text entities

- **Diseases:** thrombotic (MESH:D013927)
- **Chemicals:** warfarin (MESH:D014859)
- **Species:** gut metagenome (species) [taxon 749906], Lacticaseibacillus rhamnosus (species) [taxon 47715], Homo sapiens (human, species) [taxon 9606], Escherichia coli ATCC 8739 (strain) [taxon 481805], Escherichia fergusonii (species) [taxon 564]

## Figures

17 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940138/full.md

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Source: https://tomesphere.com/paper/PMC12940138