# Design, Synthesis, Analysis, and Cytotoxicity of Novel Heteroaryl Derivatives of Dipyridothiazines

**Authors:** Emilia Martula, Paulina Strzyga-Łach, Marta Struga, Katarzyna Żurawska, Weronika Bagrowska, Anna Kasprzycka, Małgorzata Jeleń, Beata Morak-Młodawska

PMC · DOI: 10.3390/cimb48020128 · 2026-01-23

## TL;DR

This study designs and tests new dipyridothiazine compounds for their cancer-fighting potential and explores their interaction with a cancer-related protein.

## Contribution

The paper introduces novel 10-heteroaryl dipyridothiazine derivatives and evaluates their cytotoxic and HDAC6 inhibitory properties.

## Key findings

- Some dipyridothiazine derivatives showed significant cytotoxicity against breast and lung cancer cells.
- Molecular modeling revealed that 2,7-diazaphenothiazine-based derivatives are more effective HDAC6 inhibitors.
- A preliminary structure-activity relationship analysis was conducted to explain differences in activity.

## Abstract

Heterocyclic compounds have enormous pharmacological potential and therefore play a key role in the design of new drugs. Dipyridothiazines, both heterocyclic compounds and phenothiazine derivatives, exhibit promising anticancer, immunostimulatory, and antioxidant activities. The aim of this study was to design, synthesize, and evaluate the cytotoxicity of new 10-heteroaryl dipyridothiazines based on 2,7- and 3,6-diazaphenothiazine cores. The structural characterization of the new compounds was confirmed by spectroscopic methods. Cytotoxicity analysis was performed using the MTT assay against human keratinocytes (HaCaT) and two types of cancer cell lines: breast cancer (MDA-MB-231), lung carcer (A-549). The reference drugs used in the study were doxorubicin and cisplatin. The group of derivatives studied included active compounds as well as inactive derivatives. In order to explain differences in an activity level, molecular modelling supported by molecular dynamics was performed on histone deacetylase 6 (HDAC6), a known therapeutic target associated with oncogenic transformation and cancer metastasis. Molecular docking indicated that the derivative formed on the 2,7-diazaphenothiazine core is a more potent HDAC6 inhibitor, characterized by more stable binding and more favourable complex energy, despite minimal structural differences compared to the compound formed on the 3,6-diazaphenothiazine core. A preliminary SAR analysis was performed.

## Linked entities

- **Proteins:** HDAC6 (histone deacetylase 6)
- **Chemicals:** doxorubicin (PubChem CID 31703), cisplatin (PubChem CID 5460033)
- **Diseases:** breast cancer (MONDO:0004989), lung cancer (MONDO:0005138)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** HDAC6 (histone deacetylase 6) [NCBI Gene 10013] {aka CPBHM, HD6, JM21, KDAC6, PPP1R90}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, CD2 (CD2 molecule) [NCBI Gene 914] {aka LFA-2, SRBC, T11}, cd2 (CD2 molecule) [NCBI Gene 101884448] {aka si:ch211-132g1.1}, hdac6 (histone deacetylase 6) [NCBI Gene 565482] {aka wu:fc31d02}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}
- **Diseases:** skin cancer (MESH:D012878), injury to (MESH:D014947), inflammatory (MESH:D007249), glioma (MESH:D005910), melanoma (MESH:D008545), Alzheimer's disease (MESH:D000544), lung cancer (MESH:D008175), lung carcer (MESH:D008171), diabetes (MESH:D003920), cancer (MESH:D009369), bacterial infections (MESH:D001424), breast adenocarcinoma (MESH:D001943), ovarian cancer (MESH:D010051), metastasis (MESH:D009362), Cytotoxicity (MESH:D064420)
- **Chemicals:** water (MESH:D014867), benzene (MESH:D001554), thiazole (MESH:D013844), raloxifene (MESH:D020849), trichostatin A (MESH:C012589), Al2O3 (MESH:D000537), benzimidazole (MESH:C031000), isopropanol (MESH:D019840), thiabendazole (MESH:D013827), ethanol (MESH:D000431), 13C (MESH:C000615229), sodium hydroxide (MESH:D012972), Phenothiazines (MESH:D010640), pyrimidine (MESH:C030986), oxygen (MESH:D010100), Zn (MESH:D015032), formazan (MESH:D005562), mineral oil (MESH:D008899), nitrogen (MESH:D009584), streptomycin (MESH:D013307), carbon (MESH:D002244), benzothiazoles (MESH:D052160), quinoline (MESH:C037219), CO2 (MESH:D002245), benzoxazoles (MESH:D001583), NaH (MESH:C025451), pyrrole (MESH:D011758), CHCl3 (MESH:D002725), thiophene (MESH:D013876), thiazolidine (MESH:D053778), thiazine (MESH:D013843), H (MESH:D006859), Heterocyclic compounds (MESH:D006571), DMSO (MESH:D004121), pyrazine (MESH:D011719), phenothiazine (MESH:C031637), cisplatin (MESH:D002945), 10-heteroaryl derivatives (-), 2H (MESH:D003903), sulfur (MESH:D013455), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MESH:C022616), doxorubicin (MESH:D004317), azine (MESH:C023666), thiazepine (MESH:D013841), rosiglitazone (MESH:D000077154), ritonavir (MESH:D019438), penicillin (MESH:D010406), Na2SO4 (MESH:C012036), thiopyran (MESH:C522033), amino acids (MESH:D000596), MTT (MESH:C070243), 2,6-dichloropyrazine (MESH:C000592419), chlorine (MESH:D002713)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), A-549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), HaCaT — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0038)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940024/full.md

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Source: https://tomesphere.com/paper/PMC12940024