# Disruption of Cell-Adhesion Signaling Resolves Unwanted Progenitor Specification in Stem Cell-Derived α and β Cell Grafts

**Authors:** Kyle R. Knofczynski, Ethan W. Law, Sean Lewis-Brinkman, Zenith Khashim, Anna Marie R. Schornack, Swikriti Shrestha, Lauren T. Jennings, Quinn P. Peterson

PMC · DOI: 10.3390/cells15040314 · 2026-02-07

## TL;DR

Disrupting cell-adhesion signaling in stem cell-derived α and β cells reduces unwanted growth after transplantation, improving their safety for treating type 1 diabetes.

## Contribution

This study identifies shared outgrowth-driving populations in SC-α and SC-β cells and shows that disrupting cell-adhesion signaling improves their safety profile.

## Key findings

- SC-α cells generate outgrowths similar to SC-β cells, marked by SOX9, CDX2, or SOX2.
- Cell-adhesion signaling is enriched in outgrowth-driving populations identified via single-cell RNA sequencing.
- Dispersing and reaggregating cells reduces outgrowth propensity in both SC-α and SC-β grafts.

## Abstract

What are the main findings?
An enrichment in cell-adhesion signaling is identified via single-cell RNA sequencing in the outgrowth-driving populations of transplanted stem cell-derived β and α cell products.The interruption of cell-adhesion signaling via Notch inhibition or single-cell dissociation disrupts outgrowth-driving populations in transplant-ready cell populations.

An enrichment in cell-adhesion signaling is identified via single-cell RNA sequencing in the outgrowth-driving populations of transplanted stem cell-derived β and α cell products.

The interruption of cell-adhesion signaling via Notch inhibition or single-cell dissociation disrupts outgrowth-driving populations in transplant-ready cell populations.

What are the implications of the main findings?
The dispersion and reaggregation of stem cell-derived β and α cells enhances their safety profiles following transplantation in mice.

The dispersion and reaggregation of stem cell-derived β and α cells enhances their safety profiles following transplantation in mice.

Directed differentiation protocols have recently been developed to produce stem cell-derived α (SC-α) cells as a potential component of a complete cell-based therapy for T1D, to complement the more widely studied stem cell-derived β (SC-β) cells. Differentiation protocols for SC-β cells produce off-target cell populations implicated in the development of outgrowths in SC-β cell grafts, but outgrowths from SC-α cells have not been explored. This study identifies that engrafted SC-α cells generate outgrowths of similar composition to SC-β cell outgrowths. Both cell types share outgrowth-driving populations marked by SOX9, CDX2, or SOX2. Single-cell RNA sequencing was used to reveal an enrichment in cell-adhesion signaling events in outgrowth-driving populations. Small-molecule inhibition of the Notch pathway was insufficient to disrupt all three outgrowth-driving populations. A comprehensive disruption of cell-adhesion signaling via single-cell dispersion and reaggregation is found to reduce the outgrowth propensity in engrafted SC-α and SC-β cells. Together, these results suggest that disrupting residual progenitor cells with SC-α and SC-β cell clusters can enhance the safety profile of these cell therapy products for T1D therapy.

## Linked entities

- **Genes:** SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662], CDX2 (caudal type homeobox 2) [NCBI Gene 1045], SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657]
- **Diseases:** type 1 diabetes (MONDO:0005147)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** PDX1 (pancreatic and duodenal homeobox 1) [NCBI Gene 3651] {aka GSF, IDX-1, IPF1, IUF1, MODY4, PAGEN1}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, Tph1 (tryptophan hydroxylase 1) [NCBI Gene 21990] {aka Tph}, PTF1A (pancreas associated transcription factor 1a) [NCBI Gene 256297] {aka PACA, PAGEN2, PTF1-p48, bHLHa29, p48}, POU5F1 (POU class 5 homeobox 1) [NCBI Gene 5460] {aka OCT3, OCT4, OCT4Borf1, OTF-3, OTF3, OTF4}, Chga (chromogranin A) [NCBI Gene 12652] {aka ChrA, cgA}, JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182] {aka AGS, AGS1, AHD, AWS, CD339, CMT2HH}, scb (scabby) [NCBI Gene 20242], CPA1 (carboxypeptidase A1) [NCBI Gene 1357] {aka CPA}, CDX2 (caudal type homeobox 2) [NCBI Gene 1045] {aka CDX-3, CDX2/AS, CDX3}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, Sox9 (SRY (sex determining region Y)-box 9) [NCBI Gene 20682] {aka 2010306G03Rik, mKIAA4243, mSox9}, VTN (vitronectin) [NCBI Gene 7448] {aka V75, VN, VNT}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, DLK1 (delta like non-canonical Notch ligand 1) [NCBI Gene 8788] {aka DLK, DLK-1, Delta1, FA1, PREF1, Pref-1}, Cdx2 (caudal type homeobox 2) [NCBI Gene 12591] {aka Cdx-2}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, NKX6-1 (NK6 homeobox 1) [NCBI Gene 4825] {aka NKX6.1, NKX6A}, HES1 (hes family bHLH transcription factor 1) [NCBI Gene 3280] {aka HES-1, HHL, HRY, bHLHb39}, BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, Cdh2 (cadherin 2) [NCBI Gene 12558] {aka CDHN, N-CAD, Ncad}, TPH1 (tryptophan hydroxylase 1) [NCBI Gene 7166] {aka TPRH, TRPH}, SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662] {aka CMD1, CMPD1, ENH13, SRA1, SRXX2, SRXY10}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, Sox2 (SRY (sex determining region Y)-box 2) [NCBI Gene 20674] {aka Sox-2, lcc, ysb}
- **Diseases:** hyper- and hypo-glycemia (MESH:D052456), autoimmune disease (MESH:D001327), Tumor (MESH:D009369), diabetic (MESH:D003920), injury to (MESH:D014947), T1D (MESH:D003922), end-stage renal disease (MESH:D007676), hypoglycemia (MESH:D007003)
- **Chemicals:** Bleomycin (MESH:D001761), Compound E (MESH:D003348), Triton X-100 (MESH:D017830), LDN 193189 (MESH:C554430), Trypan Blue (MESH:D014343), paraffin (MESH:D010232), PBS (MESH:D007854), eosin (MESH:D004801), 4',6-diamidino-2-phenylindole (MESH:C007293), CO2 (MESH:D002245), Y27632 (MESH:C108830), H&amp;E (MESH:D006371), BioRender (-), Hematoxylin (MESH:D006416), sodium citrate (MESH:D000077559), Retinoic acid (MESH:D014212)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** NIHhESC-09-0021 — Homo sapiens (Human), Transformed cell line (CVCL_8U35), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HUES8 — Homo sapiens (Human), Embryonic stem cell (CVCL_B207), SC-alpha — Gallus gallus (Chicken), Somatic stem cell (CVCL_JE75)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940016/full.md

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Source: https://tomesphere.com/paper/PMC12940016