# Preparation and Identification of the Novel Umami Peptides from Sea Cucumber Viscera Hydrolysate

**Authors:** Xinmiao Ren, Yiling Zhong, Changyun Wang, Qingping Liang, Shuang Li, Rongqiang Chen, Dongyu Li, Changliang Zhu, Xiaodan Fu, Haijin Mou

PMC · DOI: 10.3390/foods15040673 · 2026-02-12

## TL;DR

Researchers identified new umami peptides from sea cucumber viscera that could enhance flavor naturally without high sodium.

## Contribution

The study introduces novel umami peptides from sea cucumber viscera by-products with potential as low-sodium flavor enhancers.

## Key findings

- Synergistic dual-enzyme hydrolysis produced a hydrolysate with a 1.75-fold higher umami signal than single-enzyme methods.
- Thirty-three umami peptides were identified, with two (DFLDDGPG and SDTGNFGF) showing strong binding to the umami receptor T1R1/T1R3.
- Peptide DFLDDGPG enhanced umami flavor in salty systems, validated by sensory panels and statistical analysis.

## Abstract

Sea cucumber viscera by-products are abundant but remain underutilized. Although the development of umami peptides from marine by-products has been well-reported, sea cucumber viscera have received less attention. In this study, an umami-rich hydrolysate was prepared from sea cucumber viscera through synergistic dual-enzyme hydrolysis. Under optimal conditions, the co-hydrolysis using Flavourzyme and aminopeptidase yielded extraction rates of 69.38% for solids, 67.29% for protein, and 66.96% for total sugar, and produced a 1.75-fold higher umami signal intensity (electronic tongue) than the single-enzyme (Flavourzyme) hydrolysate. The target umami fraction was enriched through sensory-guided separation combined with ultrafiltration and ion-exchange chromatography. Thirty-three umami peptides, predominantly derived from actin hydrolysis, were identified in this fraction via peptidomics and virtual screening. Based on docking simulations against the umami receptor T1R1/T1R3, two peptides (DFLDDGPG and SDTGNFGF) with the lowest docking scores were selected. The predictions revealed that two peptides bind to the T1R3 subunit via hydrogen bonds and π-related interactions. The umami-enhancing effect of peptide DFLDDGPG in salty systems was demonstrated by a trained panel (n = 10) across concentration ranges of 0.1–1.0 mg/mL peptide and 0.1–1.0% NaCl, with a positive correlation validated by RSM and ANOVA (p < 0.05). This study identified novel umami peptides from sea cucumber by-products as promising candidates for natural, low-sodium flavor enhancers.

## Linked entities

- **Proteins:** TAS1R1 (taste 1 receptor member 1), TAS1R3 (taste 1 receptor member 3), ACTIN (hypothetical protein)
- **Chemicals:** NaCl (PubChem CID 5234), Flavourzyme (PubChem CID 15578), aminopeptidase (PubChem CID 168266279)

## Full-text entities

- **Genes:** Actin [NCBI Gene 101221679], GRM3 (glutamate metabotropic receptor 3) [NCBI Gene 2913] {aka GLUR3, GPRC1C, MGLUR3, mGlu3}, GRM2 (glutamate metabotropic receptor 2) [NCBI Gene 2912] {aka GLUR2, GPRC1B, MGLUR2, mGlu2}, TAS1R1 (taste 1 receptor member 1) [NCBI Gene 80835] {aka GM148, GPR70, T1R1, TR1}, TAS1R3 (taste 1 receptor member 3) [NCBI Gene 83756] {aka T1R3}
- **Diseases:** toxicity (MESH:D064420), injury to (MESH:D014947), inflammatory (MESH:D007249), bitter (MESH:D013651)
- **Chemicals:** hydrogen (MESH:D006859), THR- (MESH:D013912), sulfuric acid (MESH:C033158), citric acid (MESH:D019343), Q (MESH:D005973), GMP (MESH:C066524), sucrose (MESH:D013395), Sepharose (MESH:D012685), Asp (MESH:D001224), Urea (MESH:D014508), MSG (MESH:D012970), Amino acid (MESH:D000596), SER (MESH:D012694), AntiFlam (-), caffeine (MESH:D002110), sodium (MESH:D012964), sodium phosphate (MESH:C018279), HCl (MESH:D006851), Glu (MESH:D018698), asparagine (MESH:D001216), GLY (MESH:D005998), water (MESH:D014867), phenol (MESH:D019800), Peptides (MESH:D010455), IMP (MESH:D007291), Acetonitrile (MESH:C032159), C (MESH:D002244), Ala (MESH:D000409), Met (MESH:D008715), oligopeptides (MESH:D009842), NaCl (MESH:D012965), sugar (MESH:D000073893), formic acid (MESH:C030544), salt (MESH:D012492), phosphate (MESH:D010710)
- **Species:** Gallus gallus (bantam, species) [taxon 9031], Patinopecten sp. (scallop, species) [taxon 6574], Apostichopus japonicus (Japanese sea cucumber, species) [taxon 307972], Sardina pilchardus (European pilchard, species) [taxon 27697], Cucumis sativus (cucumber, species) [taxon 3659], Homo sapiens (human, species) [taxon 9606], Holothuroidea (holothurians, class) [taxon 7705], Paracentrotus lividus (common sea urchin, species) [taxon 7656], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Agaricus bisporus (common mushroom, species) [taxon 5341]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939894/full.md

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Source: https://tomesphere.com/paper/PMC12939894