# Clinical Importance of Molecular Biomarkers in Pleural Mesothelioma

**Authors:** Logan Roof, Kenna Koehler, Claire Verschraegen

PMC · DOI: 10.3390/cancers18040679 · 2026-02-19

## TL;DR

This review explores how molecular biomarkers can help personalize treatment for pleural mesothelioma, a rare and aggressive cancer linked to asbestos exposure.

## Contribution

The paper highlights the potential of dynamic biomarkers and genomic alterations for guiding treatment and improving outcomes in mesothelioma.

## Key findings

- PD-L1 and TMB show inconsistent predictive value in mesothelioma and are not widely used in clinical decisions.
- Circulating tumor DNA and minimal residual disease detection are emerging tools for monitoring treatment response.
- Genomic alterations like MTAP, BAP1, CDKN2A, and NF2/YAP/TEAD offer potential targets for new therapies.

## Abstract

Pleural mesothelioma is a rare and aggressive cancer involving the lining of the lung, called the pleura, and is often associated with exposure to asbestos. This cancer is difficult to treat, and survival remains poor despite the recent development of new treatments. Current treatments include surgery, radiation, chemotherapy, immunotherapy, targeted therapy, and combinations of these modalities. At this time, it is difficult to know upfront which patients will benefit from which treatments. It is important to develop tools that can predict which patients may benefit from certain treatments and how to tailor these treatments over time. This review discusses the existing data on promising new tools to help guide personalized treatment approaches with the goal of improving outcomes for patients with mesothelioma.

Pleural mesothelioma (PM) is a rare malignancy with opportunities for improvement in current treatment paradigms despite recent advances in systemic therapy. While histology remains the most clinically relevant prognostic indicator, the expanding use of immunotherapy and ongoing clinical trials involving targeted therapies have increased interest in the development of predictive and prognostic biomarkers in this disease. This review summarizes the current biologic and therapeutic landscape of PM and the biomarkers that influence prognosis and treatment response. Biomarkers such as programmed death ligand 1 (PD-L1) expression and tumor mutational burden (TMB) demonstrate inconsistent predictive value in PM and are not currently used in clinical decision pathways in the real-world setting. This review highlights the developing role of dynamic biomarkers such as circulating tumor DNA (ctDNA) for molecular response assessment and minimal residual disease (MRD) detection. This review also examines important genomic and transcriptomic alterations in PM, such as MTAP, BAP1, CDKN2A, and NF2/YAP/TEAD. These alterations provide potential targets for ongoing early-phase clinical trials. Future advances in PM will depend on the development and integration of comprehensive biomarker models that combine clinicopathologic, immune, and molecular features of this complex and heterogenous disease.

## Linked entities

- **Genes:** MTAP (methylthioadenosine phosphorylase) [NCBI Gene 4507], BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314], CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029], NF2 (NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor) [NCBI Gene 4771], YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413], sd (scalloped) [NCBI Gene 32536]
- **Proteins:** CD274 (CD274 molecule)
- **Diseases:** pleural mesothelioma (MONDO:0003308), mesothelioma (MONDO:0005065)

## Full-text entities

- **Genes:** BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}, SETD2 (SET domain containing 2, histone lysine methyltransferase) [NCBI Gene 29072] {aka HBP231, HIF-1, HIP-1, HSPC069, HYPB, KMT3A}, Havcr2 (hepatitis A virus cellular receptor 2) [NCBI Gene 171285] {aka TIM-3, Tim3, Timd3}, MIR17HG (miR-17-92a-1 cluster host gene) [NCBI Gene 407975] {aka C13orf25, LINC00048, MIHG1, MIRH1, MIRHG1, NCRNA00048}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, MIR29A (microRNA 29a) [NCBI Gene 407021] {aka MIRN29, MIRN29A, hsa-mir-29, hsa-mir-29a, miRNA29A, mir-29a}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, TRAF7 (TNF receptor associated factor 7) [NCBI Gene 84231] {aka CAFDADD, RFWD1, RNF119}, Vsir (V-set immunoregulatory receptor) [NCBI Gene 74048] {aka 4632428N05Rik, Dies1, PD-1H, VISTA}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Nr1i3 (nuclear receptor subfamily 1, group I, member 3) [NCBI Gene 12355] {aka CAR, CAR-beta, Care2, ESTM32, MB67}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, MIR29C (microRNA 29c) [NCBI Gene 407026] {aka MIRN29C, miRNA29C, mir-29c}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, MIR98 (microRNA 98) [NCBI Gene 407054] {aka MIRLET7L, MIRN98, hsa-mir-98, miR-98}, SF3B1 (splicing factor 3b subunit 1) [NCBI Gene 23451] {aka Hsh155, MDS, PRP10, PRPF10, SAP155, SF3b155}, MTAP (methylthioadenosine phosphorylase) [NCBI Gene 4507] {aka BDMF, DMSFH, DMSMFH, HEL-249, LGMBF, MSAP}, MIR26A1 (microRNA 26a-1) [NCBI Gene 407015] {aka MIR26A, MIRN26A1, mir-26a-1}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, NF2 (NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor) [NCBI Gene 4771] {aka ACN, BANF, SCH, SWNV, merlin-1}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, DDX3X (DEAD-box helicase 3 X-linked) [NCBI Gene 1654] {aka CAP-Rf, DBX, DDX14, DDX3, HLP2, MRX102}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Il1 (interleukin 1 complex) [NCBI Gene 111343] {aka Il-1}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, Tigit (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 100043314] {aka Vstm3}, MIR19B1 (microRNA 19b-1) [NCBI Gene 406980] {aka C13orf25, MIR19B, MIRH1, MIRHG1, MIRN19B1, miR-19b-1}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, MIR26B (microRNA 26b) [NCBI Gene 407017] {aka MIRN26B, hsa-mir-26b, miR-26b}, Lag3 (lymphocyte-activation gene 3) [NCBI Gene 16768] {aka CD223, LAG-3, Ly66}, PRMT5 (protein arginine methyltransferase 5) [NCBI Gene 10419] {aka HRMT1L5, HSL7, IBP72, JBP1, SKB1, SKB1Hs}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Lta (lymphotoxin A) [NCBI Gene 16992] {aka LT, LT-[a], LT-alpha, LT[a], LTalpha, Ltx}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, EZH1 (enhancer of zeste 1 polycomb repressive complex 2 subunit) [NCBI Gene 2145] {aka KMT6B}, Vegfa (vascular endothelial growth factor A) [NCBI Gene 22339] {aka L-VEGF, Vegf, Vpf}, MIR1323 (microRNA 1323) [NCBI Gene 100302255] {aka MIRN1323, hsa-mir-1323, mir-1323}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}
- **Diseases:** stage II-IV (MESH:D062706), renal cell carcinoma (MESH:D002292), uveal and cutaneous melanoma (MESH:C536494), Mesothelioma (MESH:D008654), deleted (MESH:D002872), peritoneal mesothelioma (MESH:D010538), cough (MESH:D003371), weight loss (MESH:D015431), deficient (MESH:D007153), Epithelioid (MESH:D012509), fever (MESH:D005334), PM (MESH:D000086002), NSCLC (MESH:D002289), BAP1-deficient (OMIM:604370), pleural effusions (MESH:D010996), TMB (MESH:D009369), pleural thickening (MESH:D010995), dyspnea (MESH:D004417), lung cancer (MESH:D008175), injury to (MESH:D014947), inflammatory (MESH:D007249), pain (MESH:D010146)
- **Chemicals:** nivolumab (MESH:D000077594), tazemetostat (MESH:C000593333), ribociclib (MESH:C000589651), niraparib (MESH:C545685), Pembrolizumab (MESH:C582435), Asbestos (MESH:D001194), APG-115 (-), cisplatin (MESH:D002945), MTA (MESH:D000068437), vorinostat (MESH:D000077337), CUDC-907 (MESH:C576940), carboplatin (MESH:D016190), ipilimumab (MESH:D000074324), Bevacizumab (MESH:D000068258), rucaparib (MESH:C531549), abemaciclib (MESH:C000590451), dostarlimab (MESH:C000719628), Platinum (MESH:D010984)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

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Source: https://tomesphere.com/paper/PMC12939869