# Microbiological Quality of Spanish Aged Cheeses and the Antimicrobial Resistance Profiles of Associated Enterococci, Staphylococci and Enterobacterales

**Authors:** Celia Arraiz-Fernandez, Alba Martinez-Laorden, Gonzalo Ibañez-Torija, Elena Gonzalez-Fandos

PMC · DOI: 10.3390/foods15040721 · 2026-02-15

## TL;DR

This study analyzed Spanish aged cheeses to assess their microbial quality and the antimicrobial resistance of bacteria like enterococci, staphylococci, and Enterobacterales.

## Contribution

The study provides new insights into antimicrobial resistance profiles in cheese-associated bacteria from raw and pasteurized milk cheeses.

## Key findings

- Raw milk cheeses showed higher microbial diversity compared to pasteurized milk cheeses.
- Multi-resistant strains of E. faecalis, S. equorum, and Enterobacterales were identified, with notable resistance rates.
- All E. coli isolates from raw milk cheeses were ESBL producers.

## Abstract

The aim of this work was to evaluate the microbiological quality of Spanish aged cheeses and the antimicrobial resistance of enterococci, staphylococci and Enterobacterales. A total of 60 aged cheeses produced in northern Spain were collected at the retail level. Mesophiles, lactic acid bacteria, staphylococci, enterococci, Enterobacterales, and yeast counts were determined. More microbial diversity was found in raw milk cheeses than in those elaborated with pasteurized milk. In general, lactic acid bacteria were the dominant microorganism, mainly Lactiplantibacillus lactis. High resistance rates were observed in E. faecalis strains isolated from raw milk cheeses (74.42%), being 9.30% multi-resistant. The dominant staphylococci found was Staphylococcus equorum. Multi-resistant S. equorum strains were isolated both from raw (1.69%) and pasteurized milk cheeses (9.09%). Hafnia alvei was the predominant bacterium in raw milk cheeses. Fifteen Enterobacterales strains, isolated from raw milk cheeses, showed multi-resistance (37.5%), and seven strains were ESBL producers (17.5%). Escherichia coli was only isolated from 5. 56% of raw milk cheeses, but all of them were extended-espectrum B-lactamase (ESBL) producers. The dominant yeast was D. hansenni, followed by Kluyveromyces lactis.

## Linked entities

- **Species:** Enterococcus faecalis (taxon 1351), Staphylococcus equorum (taxon 246432), Hafnia alvei (taxon 569), Escherichia coli (taxon 562), Kluyveromyces lactis (taxon 28985)

## Full-text entities

- **Genes:** ESBL [NCBI Gene 13906541]
- **Diseases:** PDA (MESH:D004374), MRSA (MESH:D013203), injury to (MESH:D014947), S. capitis (MESH:D014006)
- **Chemicals:** CRO (-), cefotaxime (MESH:D002439), S (MESH:D013455), aztreonam (MESH:D001398), K (MESH:D011188), nitrofurantoin (MESH:D009582), penicillin (MESH:D010406), NA (MESH:D012964), tetracycline (MESH:D013752), ATM (MESH:C020809), trimethoprim (MESH:D014295), ceftriaxone (MESH:D002443), CPD (MESH:C007077), FAD (MESH:D005182), amikacin (MESH:D000583), fluoroquinolones (MESH:D024841), rifampicin (MESH:D012293), linezolid (MESH:D000069349), tedizolid (MESH:C546016), ampicillin-sulbactam (MESH:C035444), imipenem (MESH:D015378), AMP (MESH:D000249), ampicillin (MESH:D000667), minocycline (MESH:D008911), doripenem (MESH:D000077726), trimethoprim-sulfamethoxazole (MESH:D015662), W (MESH:D014414), ETP (MESH:D005000), lincomycin (MESH:D008034), LEV (MESH:D007978), chloramphenicol (MESH:D002701), gatifloxacin (MESH:D000077734), cefoxitin (MESH:D002440), TE (MESH:D013691), doxycycline (MESH:D004318), teicoplanin (MESH:D017334), enrofloxacin (MESH:D000077422), CPT (MESH:C000708228), P (MESH:D010758), TEC (MESH:C405323), sulfadiazine (MESH:D013411), FEP (MESH:D011138), piperacillin (MESH:D010878), cefpodoxime (MESH:C053268), norfloxacin (MESH:D009643), amoxicillin-clavulanic acid (MESH:D019980), mupirocin (MESH:D016712), IMP (MESH:D007291), agar (MESH:D000362), ciprofloxacin (MESH:D002939), ceftaroline (MESH:C490727), tigecycline (MESH:D000078304), C (MESH:D002244), streptomycin (MESH:D013307), water (MESH:D014867), ertapenem (MESH:D000077727), clindamycin (MESH:D002981), nalidixic acid (MESH:D009268), CAZ (MESH:D002442), vancomycin (MESH:D014640)
- **Species:** Dujonia boleticola (species) [taxon 45525], Enterococcus gilvus (species) [taxon 160453], Kluyveromyces lactis (species) [taxon 28985], Enterococcus gallinarum (species) [taxon 1353], Microbacterium lacticum (species) [taxon 33885], Enterobacter hormaechei (CDC Enteric Group 75, species) [taxon 158836], Klebsiella oxytoca (species) [taxon 571], Lodderomyces parapsilosis (species) [taxon 5480], Staphylococcus capitis (species) [taxon 29388], Staphylococcus aureus (species) [taxon 1280], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus pasteuri (species) [taxon 45972], Leclercia adecarboxylata (species) [taxon 83655], Lelliottia amnigena (species) [taxon 61646], Dujonia zeylanoides (species) [taxon 5493], Homo sapiens (human, species) [taxon 9606], Staphylococcus equorum (species) [taxon 246432], Staphylococcus epidermidis (species) [taxon 1282], Weissella (genus) [taxon 46255], Bacillus thuringiensis (species) [taxon 1428], Klebsiella ornithinolytica (species) [taxon 54291], Bos taurus (bovine, species) [taxon 9913], Enterobacter bugandensis (species) [taxon 881260], Enterococcus faecium (species) [taxon 1352], Staphylococcus haemolyticus (species) [taxon 1283], Klebsiella planticola (species) [taxon 575], Capra hircus (domestic goat, species) [taxon 9925], Lactiplantibacillus plantarum (species) [taxon 1590], Debaryomyces hansenii (species) [taxon 4959], Proteus (genus) [taxon 210425], Enterococcus malodoratus (species) [taxon 71451], Brochothrix thermosphacta (species) [taxon 2756], Staphylococcus simulans (species) [taxon 1286], Microbacterium paraoxydans (species) [taxon 199592], Escherichia coli (E. coli, species) [taxon 562], Staphylococcus saprophyticus (species) [taxon 29385], Hafnia alvei (species) [taxon 569], Clavispora lusitaniae (species) [taxon 36911], Leuconostoc mesenteroides (species) [taxon 1245], Yarrowia lipolytica (species) [taxon 4952], Fermentozyma sake (species) [taxon 39397], Staphylococcus piscifermentans (species) [taxon 70258], Acinetobacter (genus) [taxon 469], Enterococcus durans (species) [taxon 53345], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Psychrobacter alimentarius (species) [taxon 261164], Morganella (genus) [taxon 108061], Kluyveromyces marxianus (species) [taxon 4911], Leuconostoc pseudomesenteroides (species) [taxon 33968], Enterococcus faecalis (species) [taxon 1351], Enterococcus hirae (species) [taxon 1354], Ovis aries (domestic sheep, species) [taxon 9940], Hafnia (genus) [taxon 568], C. intermedia [taxon 74405], Lactococcus lactis subsp. lactis (subspecies) [taxon 1360], Serratia (genus) [taxon 613], Lactococcus lactis (species) [taxon 1358], Providencia (genus) [taxon 586], Lacticaseibacillus paracasei (species) [taxon 1597], Pichia fermentans (species) [taxon 53655]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939858/full.md

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Source: https://tomesphere.com/paper/PMC12939858