# Decoding Leukemic Stem Cells in AML: From Identification to Targeted Eradication

**Authors:** Elisavet Apostolidou, Vasileios Georgoulis, Dimitrios Leonardos, Leonidas Benetatos, Eleni Kapsali, Eleftheria Hatzimichael

PMC · DOI: 10.3390/diseases14020050 · 2026-01-30

## TL;DR

This review explores how leukemic stem cells in AML resist treatment and how they can be targeted for eradication.

## Contribution

The paper provides a comprehensive synthesis of recent advances in understanding and targeting leukemic stem cells in AML.

## Key findings

- Leukemic stem cells differ from normal stem cells in function and phenotype.
- Epigenetic and metabolic programs support LSC survival during chemotherapy.
- Therapeutic strategies targeting LSCs include antibodies, apoptosis inhibitors, and epigenetic agents.

## Abstract

Acute myeloid leukemia (AML) continues to pose significant therapeutic challenges, with high relapse rates driven largely by leukemic stem cells (LSCs), a rare, therapy-resistant population with self-renewal capacity, niche adaptation, and the ability to re-initiate disease. In this state-of-the-art review, we synthesize recent advances in LSC biology, addressing (i) how LSCs differ functionally and phenotypically from normal hematopoietic stem cells (HSCs), (ii) practical approaches for LSC quantification using multiparameter flow cytometry and LSC-enriched marker panels, (iii) the dysregulated signaling, metabolic and epigenetic programs that enable LSC persistence under chemotherapy and contribute to measurable residual disease, and (iv) current therapeutic strategies targeting LSC eradication, including antibody-based therapies, apoptosis and metabolic inhibitors, and emerging epigenetic agents. We also examine the key translational barriers, particularly antigen overlap with normal progenitors, microenvironmental protection, and the need for assay harmonization, while proposing a practical framework for integrating LSC assessment into risk stratification and therapeutic development.

## Linked entities

- **Diseases:** Acute myeloid leukemia (MONDO:0015667)

## Full-text entities

- **Genes:** AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IL1RAP (interleukin 1 receptor accessory protein) [NCBI Gene 3556] {aka C3orf13, IL-1RAcP, IL1R3}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, KMT2A (lysine methyltransferase 2A) [NCBI Gene 4297] {aka ALL-1, ALL1, CXXC7, GAS7, HRX, HTRX}, PARP2 (poly(ADP-ribose) polymerase 2) [NCBI Gene 10038] {aka ADPRT2, ADPRTL2, ADPRTL3, ARTD2, PARP-2, pADPRT-2}, GLI1 (GLI family zinc finger 1) [NCBI Gene 2735] {aka GLI, PAPA8, PPD1}, BMI1 (BMI1 proto-oncogene, polycomb ring finger) [NCBI Gene 648] {aka FLVI2/BMI1, PCGF4, RNF51, flvi-2/bmi-1}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, CD70 (CD70 molecule) [NCBI Gene 970] {aka CD27-L, CD27L, CD27LG, LPFS3, TNFSF7, TNLG8A}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, Evpl (envoplakin) [NCBI Gene 14027], FCGR1A (Fc gamma receptor Ia) [NCBI Gene 2209] {aka CD64, CD64A, FCG1, FCGR1, FCRI, FcgammaRI}, KLRK1 (killer cell lectin like receptor K1) [NCBI Gene 22914] {aka CD314, D12S2489E, KLR, NKG2-D, NKG2D}, PDK1 (pyruvate dehydrogenase kinase 1) [NCBI Gene 5163], Ezh2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 312299], HOXA9 (homeobox A9) [NCBI Gene 3205] {aka ABD-B, HOX1, HOX1.7, HOX1G}, Asxl1 (ASXL transcriptional regulator 1) [NCBI Gene 311553] {aka RGD1561878}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, Cd19 (CD19 antigen) [NCBI Gene 12478], BAK1 (BCL2 antagonist/killer 1) [NCBI Gene 578] {aka BAK, BAK-LIKE, BCL2L7, CDN1}, Nras (NRAS proto-oncogene, GTPase) [NCBI Gene 24605], BID (BH3 interacting domain death agonist) [NCBI Gene 637] {aka FP497}, FUT1 (fucosyltransferase 1 (H blood group)) [NCBI Gene 2523] {aka H, HH, HSC}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group)) [NCBI Gene 10058] {aka ABC, LAN, MTABC3, PRP, umat}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, BCL2L2 (BCL2 like 2) [NCBI Gene 599] {aka BCL-W, BCL2-L-2, BCLW, PPP1R51}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, Tet2 (tet methylcytosine dioxygenase 2) [NCBI Gene 310859] {aka RGD1311625}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, FOXM1 (forkhead box M1) [NCBI Gene 2305] {aka FKHL16, FOXM1A, FOXM1B, FOXM1C, HFH-11, HFH11}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, Kras (KRAS proto-oncogene, GTPase) [NCBI Gene 24525] {aka K-ras, Kras2, c-Ki-ras, p21}, ABCC1 (ATP binding cassette subfamily C member 1 (ABCC1 blood group)) [NCBI Gene 4363] {aka ABC29, ABCC, DFNA77, GS-X, MRP, MRP1}, Npm1-ps16 (nucleophosmin 1, pseudogene 16) [NCBI Gene 100361722], SELE (selectin E) [NCBI Gene 6401] {aka CD62E, ELAM, ELAM1, ESEL, LECAM2, selectin-e}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, IL5 (interleukin 5) [NCBI Gene 3567] {aka EDF, IL-5, TRF}, STAT5B (signal transducer and activator of transcription 5B) [NCBI Gene 6777] {aka GHISID2, STAT5}, Cd34 (CD34 antigen) [NCBI Gene 12490], Cebpa (CCAAT/enhancer binding protein alpha) [NCBI Gene 24252] {aka DBPCEP}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Flt3 (Fms related receptor tyrosine kinase 3) [NCBI Gene 140635], CD200 (CD200 molecule) [NCBI Gene 4345] {aka MOX1, MOX2, MRC, OX-2}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, HOXA@ (homeobox A cluster) [NCBI Gene 3197] {aka HOX1@}, CD22 (CD22 molecule) [NCBI Gene 933] {aka SIGLEC-2, SIGLEC2}, MEIS1 (Meis homeobox 1) [NCBI Gene 4211], DOT1L (DOT1 like histone lysine methyltransferase) [NCBI Gene 84444] {aka DOT1, KMT4, NDNS}, CD47 (CD47 molecule) [NCBI Gene 961] {aka IAP, MER6, OA3}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, ABCG2 (ATP binding cassette subfamily G member 2 (JR blood group)) [NCBI Gene 9429] {aka ABC15, ABCP, BCRP, BMDP, CD338, CDw338}, CXADRP1 (CXADR pseudogene 1) [NCBI Gene 653108] {aka CAR, CXADRP}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, THY1 (Thy-1 cell surface antigen) [NCBI Gene 7070] {aka CD90, CDw90}
- **Diseases:** disease (MESH:D004194), injury to (MESH:D014947), T-cell dysfunction (MESH:C536780), MFC (MESH:D054318), ELN (MESH:D007938), Myeloid leukemogenesis (MESH:D007951), cytopenias (MESH:D006402), malignancies (MESH:D009369), BMM (MESH:D001855), t(8;21) (OMIM:613700), ALL (MESH:D054198), infections (MESH:D007239), MM (MESH:D009101), aplasia (MESH:C536482), CML (MESH:D015464), cytotoxic (MESH:D064420), hypoxic (MESH:D002534), DNA Damage (MESH:D004266), neuropathic changes (MESH:D009437), tumorigenesis (MESH:D063646), LICs (MESH:D015458), R/R disease (MESH:D000069279), MDS (MESH:D009190), Hematological Malignancies (MESH:D019337), AML (MESH:D015470), cardiotoxicity (MESH:D066126), infectious complications (MESH:D003141), SCID (MESH:D045169), bone marrow failure (MESH:D000080983)
- **Chemicals:** APVO436 (-), ADP-ribose (MESH:D000246), anthracycline (MESH:D018943), amino acids (MESH:D000596), lintuzumab (MESH:C477390), pembrolizumab (MESH:C582435), AMG 176 (MESH:C000720001), etomoxir (MESH:C054207), fatty acids (MESH:D005227), carbohydrates (MESH:D002241), magrolimab (MESH:C000629291), tigecycline (MESH:D000078304), Venetoclax (MESH:C579720), CDCA (MESH:D002635), Pinometostat (MESH:C583893), 2-DG (MESH:D003847), cytarabine (MESH:D003561), ATP (MESH:D000255), olaparib (MESH:C531550), durvalumab (MESH:C000613593), AMG 330 (MESH:C587103), lipid (MESH:D008055), GO (MESH:D000079982), nivolumab (MESH:D000077594), ROS (MESH:D017382), AZD5991 (MESH:C000629704), calicheamicin (MESH:D000080084), glucose (MESH:D005947), talazoparib (MESH:C586365), azacitidine (MESH:D001374)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HL-60 — Homo sapiens (Human), Adult acute myeloid leukemia with maturation, Cancer cell line (CVCL_0002), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), U937 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_0007), KG-1 — Homo sapiens (Human), Acute myeloid leukemia without maturation, Cancer cell line (CVCL_1824)

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939826/full.md

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Source: https://tomesphere.com/paper/PMC12939826