# Comparative Analysis of Oral Microbiome in Indian Type 2 Diabetes Mellitus (T2DM) and Periodontitis Cohorts

**Authors:** Meenakshi Murmu, Rajshri Singh, Rajesh Gaikwad, Akshaya Banodkar, Sagar Barage, Preethi Sudhakara, Aruni Wilson Santhosh Kumar

PMC · DOI: 10.3390/diseases14020038 · 2026-01-23

## TL;DR

This study explores how early-onset diabetes and gum disease affect the oral microbiome in Indian adults, revealing changes in microbial networks linked to lifestyle factors.

## Contribution

The study identifies keystone taxa and network shifts in oral microbiomes of Indian T2DM and periodontitis patients under adverse lifestyles.

## Key findings

- Healthy individuals with good lifestyles had scaffold-forming oral bacteria like Corynebacterium matruchotii.
- Periodontitis and T2DM_P groups showed enrichment of inflammation-related genera like Porphyromonas and Tannerella.
- Disease groups exhibited densely connected microbial networks, contrasting with modular networks in healthy individuals.

## Abstract

Background: Type 2 diabetes mellitus (T2DM) and periodontitis are highly prevalent immune-inflammatory diseases that interact bidirectionally. However, how early-onset T2DM, periodontitis, and adverse lifestyle behaviors collectively remodel the gingival plaque microbiome at the ecological network level remains poorly understood in Indian populations. Methods: A cross-sectional 16S rRNA gene (V3–V4) sequencing study was conducted on supragingival and subgingival plaque from 60 adults (30–40 years) recruited in Mumbai. Participants were categorized as healthy (H, n = 10), periodontitis (P, n = 10), T2DM (n = 20), and T2DM with periodontitis (T2DM_P, n = 20). Comprehensive demographic, anthropometric, metabolic, periodontal, dietary, lifestyle, and oral hygiene data were collected. Sequence data were processed using QIIME2–DADA2, followed by diversity, differential abundance, and genus-level co-occurrence network analyses (Spearman |r| ≥ 0.6, FDR < 0.05; core prevalence ≥ 70%). Results: α-diversity showed no marked depletion across groups, whereas Bray–Curtis β-diversity revealed significant global separation, with maximal dissimilarity between H and T2DM_P. Healthy individuals with favorable lifestyle behaviors harbored scaffold-forming taxa such as Corynebacterium matruchotii, Lautropia mirabilis, and Capnocytophaga spp. In contrast, P and T2DM_P groups showed enrichment of proteolytic, inflammation-adapted genera including Porphyromonas, Tannerella, Treponema, Fretibacterium, Peptostreptococcus, and Selenomonas. Network analysis revealed a shift from commensal-rich modular networks to densely connected, keystone-centered disease modules. Conclusion: Early-onset T2DM and periodontitis, particularly under adverse lifestyle behaviors, reorganize plaque microbial composition and interaction architecture rather than depleting diversity, highlighting plaque-based keystone taxa and networks as targets for microbiome-informed risk stratification and integrated medical–dental–lifestyle interventions.

## Linked entities

- **Diseases:** Type 2 diabetes mellitus (MONDO:0005148), periodontitis (MONDO:0005076)

## Full-text entities

- **Genes:** IL23A (interleukin 23 subunit alpha) [NCBI Gene 51561] {aka IL-23, IL-23A, IL23P19, P19, SGRF}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, TNFSF11 (TNF superfamily member 11) [NCBI Gene 8600] {aka CD254, ODF, OPGL, OPTB2, RANKL, TNLG6B}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CCA1 (cataract, congenital, cerulean type, 1) [NCBI Gene 878] {aka CTRCT7}, BTF3P11 (basic transcription factor 3 pseudogene 11) [NCBI Gene 690] {aka BRF3L1, BTF3L1, HUMBTFB, OCIF, OPG, TNFRSF11B}
- **Diseases:** caries (MESH:D003731), injury to (MESH:D014947), gingival inflammation (MESH:D007249), Periodontitis (MESH:D010518), tooth loss (MESH:D016388), Abiotrophia defective (MESH:D000013), Metabolic disturbances (MESH:D024821), Hyperglycemia (MESH:D006943), polycystic ovarian syndromes (MESH:D011085), hyperglycemic (MESH:D006944), diabetes complications (MESH:D048909), calculus (MESH:D002137), P (MESH:D002972), immune dysfunction (MESH:D007154), dysbiosis (MESH:D064806), Diabetes (MESH:D003920), chronic periodontitis (MESH:D055113), neuropathic symptoms (MESH:D001750), plaque (MESH:D003773), bone loss (MESH:D001847), alveolar bone loss (MESH:D016301), insulin resistance (MESH:D007333), T2DM (MESH:D003924), xerostomia (MESH:D014987), autoimmune disorders (MESH:D001327), obese (MESH:D009765), bleeding (MESH:D006470), adiposity (MESH:D018205), alveolar bone resorption (MESH:D001862), overweight (MESH:D050177), metabolic dysregulation (MESH:D021081), immune dysregulation (OMIM:614878), H (MESH:D000848), halitosis (MESH:D006209), metabolic disorders (MESH:D008659), Periodontal Diseases (MESH:D010510), attachment loss (MESH:D017622), systemic diseases (MESH:D034721), alveolar (MESH:D002282)
- **Chemicals:** PBS (-), H2S (MESH:D006862), sugar (MESH:D000073893), ammonia (MESH:D000641), lactic acid (MESH:D019344), butyrate (MESH:D002087), carbohydrate (MESH:D002241), AGEs (MESH:D017127), LPS (MESH:D008070), dietary sugar (MESH:D000073417), agarose (MESH:D012685), prostaglandin E2 (MESH:D015232), Alcohol (MESH:D000438), SCFAs (MESH:D005232)
- **Species:** Porphyromonas gingivalis (species) [taxon 837], Stomatobaculum (genus) [taxon 1213720], Oricola (genus) [taxon 1594166], Streptococcus mutans (species) [taxon 1309], Campylobacter concisus (species) [taxon 199], Slackia exigua (species) [taxon 84109], Megasphaera geminata (species) [taxon 156456], Granulicatella adiacens (species) [taxon 46124], Desulfobulbus (genus) [taxon 893], Chloroflexota (GNS bacteria, phylum) [taxon 200795], Streptococcus sobrinus (species) [taxon 1310], Fusobacteriia (class) [taxon 203490], Aggregatibacter sp. (species) [taxon 1872413], Capnocytophaga leadbetteri (species) [taxon 327575], Alloprevotella rava (species) [taxon 671218], Capnocytophaga gingivalis (species) [taxon 1017], Haemophilus parainfluenzae (species) [taxon 729], Leptotrichia shahii (species) [taxon 157691], Johnsonella ignava (species) [taxon 43995], Porphyromonas (genus) [taxon 836], Kingella denitrificans (species) [taxon 502], Kingella oralis (species) [taxon 505], Cryptobacterium curtum (species) [taxon 84163], Cardiobacterium hominis (species) [taxon 2718], Neisseria cinerea (species) [taxon 483], Catonella (genus) [taxon 43996], Selenomonas (genus) [taxon 970], Peptidiphaga gingivicola (species) [taxon 2741497], Candidatus Saccharimonadota (candidate division TM7, phylum) [taxon 95818], Metamycoplasma faucium (species) [taxon 56142], Neisseria subflava (species) [taxon 28449], Schaalia cardiffensis (species) [taxon 181487], Candidatus Absconditibacteriota (phylum) [taxon 221235], Dialister invisus (species) [taxon 218538], Bifidobacterium dentium (species) [taxon 1689], Lachnoanaerobaculum umeaense (species) [taxon 617123], Actinomyces israelii (species) [taxon 1659], Streptococcus sanguinis (species) [taxon 1305], Prevotella heparinolytica (species) [taxon 28113], Treponema pectinovorum (species) [taxon 164], Spirochaetia (class) [taxon 203692], Cardiobacterium valvarum (species) [taxon 194702], Porphyromonas catoniae (species) [taxon 41976], Fretibacterium (genus) [taxon 1434006], Corynebacterium matruchotii (species) [taxon 43768], Oribacterium sinus (species) [taxon 237576], Alloprevotella tannerae (species) [taxon 76122], Leptotrichia wadei (species) [taxon 157687], Parvimonas (genus) [taxon 543311], Homo sapiens (human, species) [taxon 9606], Tannerella forsythia (species) [taxon 28112], Pyramidobacter piscolens (species) [taxon 638849], Eikenella corrodens (species) [taxon 539], Megasphaera micronuciformis (species) [taxon 187326], Granulicatella elegans (species) [taxon 137732], Rothia mucilaginosa (species) [taxon 43675], Porphyromonas pasteri (species) [taxon 1583331], Gemella morbillorum (species) [taxon 29391], Veillonella dispar (species) [taxon 39778], Metamycoplasma salivarium (species) [taxon 2124]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939639/full.md

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Source: https://tomesphere.com/paper/PMC12939639