# Effects of Eribulin on Epithelial–Mesenchymal Plasticity in Patient-Derived Breast Cancer Cultures and Excised Tissues

**Authors:** Charles L. Bidgood, Erika Morera, Binny Jaradi, Tirsa van Wyngaard, Anu T. Koikalethu, Nathalie Bock, Veenoo Agarwal, Andrew D. Redfern, Erik W. Thompson

PMC · DOI: 10.3390/cancers18040598 · 2026-02-11

## TL;DR

This study explores how eribulin affects cancer cell behavior in breast cancer tissues and cell lines, showing it can reverse a process linked to treatment resistance.

## Contribution

The study demonstrates eribulin's ability to induce epithelial-like characteristics in breast cancer cells and improve chemotherapy response in specific cancer types.

## Key findings

- Eribulin reduced EMT marker expression more effectively than standard chemotherapy in breast cancer patients.
- Eribulin exposure increased E-cadherin expression in triple-negative breast cancer cells.
- HER2-enriched breast cancer cells showed increased sensitivity to doxorubicin after eribulin treatment.

## Abstract

Eribulin is an approved therapy for the treatment of breast cancer which has been shown to reverse the epithelial-to-mesenchymal transition (EMT) and improve the efficacy of standard chemotherapies in cell lines, animal studies, and clinical specimens. Tumour EMT status has also been linked to eribulin efficacy. Based on this, we evaluated the effects of eribulin in patient-derived breast cancer cultures and a triple-negative breast cancer cell line to assess changes to EMT and therapy response. We further identified the induction of epithelial-like characteristics, including E-cadherin expression in a patient-derived HER2+ primary tissue with a predominantly mesenchymal phenotype following longitudinal eribulin exposure. Additionally, we compared EMT marker expression in breast cancers treated with standard-of-care neoadjuvant docetaxel, Adriamycin and cyclophosphamide (TAC) therapy with that observed in the neoadjuvant eribulin clinical trial.

Background: The cytotoxic agent eribulin has been shown to promote EMT reversion, reduce treatment resistance, and potentially enhance responses to a range of therapeutic agents. Methods: We examined the effects of eribulin in patient-derived breast cancer tissues and a phenotypically heterogeneous breast cancer cell line to assess EMT and chemotherapy response. Results: Nanostring-based analysis of EMT-associated gene expression in breast cancers from patients receiving standard-of-care TAC neoadjuvant chemotherapy compared to a cohort receiving neoadjuvant eribulin (NeoEribulin trial) showed markedly reduced expression of EMT markers in cancers treated with eribulin versus TAC. Through single-cell immunofluorescent imaging and analysis, we identified that HCC38 triple-negative breast cancer (TNBC) cells exhibited a shift towards an epithelial-like state marked by E-cadherin upregulation following acute eribulin exposure, but not with other chemotherapeutic agents. Investigation of primary breast cancer cultures derived from pre-neoadjuvant biopsies also revealed that HER2-enriched primary breast cancer cells displayed heightened chemosensitisation to doxorubicin (Adriamycin), which was not recapitulated in TNBC cultures. Conclusions: Our data highlight the presence of contextual parameters which govern the degree of EMT regulation by eribulin.

## Linked entities

- **Proteins:** shg (shotgun)
- **Chemicals:** eribulin (PubChem CID 11354606), doxorubicin (PubChem CID 31703), Adriamycin (PubChem CID 31703), cyclophosphamide (PubChem CID 2907), docetaxel (PubChem CID 148124)
- **Diseases:** breast cancer (MONDO:0004989), triple-negative breast cancer (MONDO:0005494)

## Full-text entities

- **Genes:** ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, CYP19A1 (cytochrome P450 family 19 subfamily A member 1) [NCBI Gene 1588] {aka ARO, ARO1, CPV1, CYAR, CYP19, CYPXIX}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, KRT6B (keratin 6B) [NCBI Gene 3854] {aka CK-6B, CK6B, K6B, KRTL1, PC2, PC4}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, ITGB4 (integrin subunit beta 4) [NCBI Gene 3691] {aka CD104, GP150, JEB5A, JEB5B}, KRT5 (keratin 5) [NCBI Gene 3852] {aka CK5, DDD, DDD1, EBS1, EBS2, EBS2A}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, VIM (vimentin) [NCBI Gene 7431], NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, KRT8 (keratin 8) [NCBI Gene 3856] {aka CARD2, CK-8, CK8, CYK8, K2C8, K8}, KRT14 (keratin 14) [NCBI Gene 3861] {aka CK14, EBS1, EBS1A, EBS1B, EBS1C, EBS1D}, CAV1 (caveolin 1) [NCBI Gene 857] {aka BSCL3, CGL3, LCCNS, MSTP085, PPH3, VIP21}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, KRT17 (keratin 17) [NCBI Gene 3872] {aka 39.1, CK-17, K17, PC2, PCHC1}, ZEB2 (zinc finger E-box binding homeobox 2) [NCBI Gene 9839] {aka HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B}, TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, TWIST2 (twist family bHLH transcription factor 2) [NCBI Gene 117581] {aka AMS, BBRSAY, DERMO1, FFDD3, SETLSS, bHLHa39}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}
- **Diseases:** oral squamous carcinoma (MESH:D000077195), Hypoxia (MESH:D000860), triple (MESH:C536008), liposarcoma (MESH:D008080), injury to (MESH:D014947), EMP (MESH:D002277), Tumour (MESH:D009369), Breast Cancer (MESH:D001943), TNBC (MESH:D064726), ovarian carcinosarcoma (MESH:D010049), mycoplasma (MESH:D009175), metastases (MESH:D009362), cytotoxic (MESH:D064420)
- **Chemicals:** 5-FU (MESH:D005472), Bevacizumab (MESH:D000068258), CPA (MESH:D003520), anthracycline (MESH:D018943), paraffin (MESH:D010232), platinum (MESH:D010984), Triton X (MESH:D017830), trastuzumab (MESH:D000068878), ERI (MESH:C490954), alpelisib (MESH:C585539), entinostat (MESH:C118739), PAC (MESH:D017239), paraformaldehyde (MESH:C003043), olaparib (MESH:C531550), ATP (MESH:D000255), CO2 (MESH:D002245), DMSO (MESH:D004121), DOC (MESH:D000077143), formalin (MESH:D005557), 4-hydroperoxy cyclophosphamide (MESH:C011272), PBS (MESH:D007854), taxane (MESH:C080625), Adriamycin (MESH:D004317), carboplatin (MESH:D016190), Beva (-), cisplatin (MESH:D002945), cetuximab (MESH:D000068818), Pembrolizumab (MESH:C582435)
- **Species:** human papillomavirus 31 (serotype) [taxon 10585], Mus musculus (house mouse, species) [taxon 10090], Human gammaherpesvirus 8 (no rank) [taxon 37296], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** V600E, V600K
- **Cell lines:** CBCa51 — Mus musculus (Mouse), Transformed cell line (CVCL_5845), CBCa23 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_K265), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HCC38 — Homo sapiens (Human), Breast ductal carcinoma, Cancer cell line (CVCL_1267), MDA-MB-468 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0419), PB3 — Mus musculus (Mouse), Factor-dependent cell line (CVCL_5346), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), CBCa50 — Homo sapiens (Human), Friedreich ataxia, Finite cell line (CVCL_ZC06)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939509/full.md

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Source: https://tomesphere.com/paper/PMC12939509