# A Comprehensive Adenoid Cystic Carcinoma-Derived Organoid Platform for Disease Modeling and Drug Screening Captures Interpatient Heterogeneity

**Authors:** Yingyue Chai, Yi Sui, Xinyuan Zhang, Shang Xie, Yifan Kang, Yanrui Feng, Xiaofeng Shan, Zhigang Cai

PMC · DOI: 10.3390/cells15040383 · 2026-02-23

## TL;DR

A new organoid platform for adenoid cystic carcinoma captures tumor diversity and enables fast drug testing.

## Contribution

Development of a high-throughput ACC organoid platform that preserves tumor heterogeneity and enables rapid drug screening.

## Key findings

- ACC organoids successfully recapitulate histopathological and genomic features of parental tumors.
- The organoid platform enables high-throughput drug screening with an 88% success rate.
- RNA and protein analyses confirm the presence of key tumor markers and cellular components in ACC organoids.

## Abstract

What are the main findings?
Successfully established a stable, high-success-rate, and high-throughput comprehensive platform for ACC organoids culture.ACC organoids platform enables efficient screening of multiple drugs within two weeks.

Successfully established a stable, high-success-rate, and high-throughput comprehensive platform for ACC organoids culture.

ACC organoids platform enables efficient screening of multiple drugs within two weeks.

What are the implications of the main findings?
Providing an in vitro research model for personalized precision medicine in ACC, contributing to a deeper understanding of tumor biological characteristics.The rapid drug screening system holds promise as a clinical tool for medication guidance, providing a scientific basis for safer and more effective patient treatment.

Providing an in vitro research model for personalized precision medicine in ACC, contributing to a deeper understanding of tumor biological characteristics.

The rapid drug screening system holds promise as a clinical tool for medication guidance, providing a scientific basis for safer and more effective patient treatment.

Salivary adenoid cystic carcinoma (ACC) is a highly aggressive salivary gland malignancy characterized by infiltrative growth patterns that hinder complete resection. Lacking effective chemotherapy, recurrent or metastatic ACC remains clinically incurable. This research aimed to develop an efficient culture system for ACC organoids, which can preserve tumor heterogeneity and establish a reliable drug screening platform. Under our optimized culture conditions, ACC organoids grew rapidly and successfully recapitulated three characteristic histopathological patterns. Whole-genome sequencing (WGS) further confirmed they mirrored the genomic features of their parental tumors, including significantly mutated genes, non-coding regulatory region mutations, copy number variation, and minor allele frequency. RNA sequencing confirmed that ACC organoids recapitulated the MYB-NFIB fusion gene. At the protein level, these organoids contained multiple cellular components, including epithelial cells, mesenchymal cells, K7+ duct cells, a-SMA+ myoepithelial cells, K5+ basement membrane cells, and CD44+ tumor stem cells, with proper spatial distribution patterns. With an 88% success rate, the first ACC organoid platform, incorporating normal salivary gland (SG) organoids as toxicity controls, enabled high-throughput drug testing within two weeks. In conclusion, we developed an efficient culture system for ACC organoids that can preserve tumor heterogeneity and establish a reliable drug screening platform for mechanistic studies and personalized precision therapy research.

## Linked entities

- **Genes:** MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602], NFIB (nuclear factor I B) [NCBI Gene 4781]
- **Proteins:** KRT7 (keratin 7), ACTA1 (actin alpha 1, skeletal muscle), KRT5 (keratin 5), CD44 (CD44 molecule (IN blood group))
- **Diseases:** adenoid cystic carcinoma (MONDO:0004971), ACC (MONDO:0006639)

## Full-text entities

- **Genes:** MKI67 (marker of proliferation Ki-67) [NCBI Gene 4288] {aka KIA, MIB-, MIB-1, PPP1R105}, KRT7 (keratin 7) [NCBI Gene 3855] {aka CK7, K2C7, K7, SCL}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PROM1 (prominin 1) [NCBI Gene 8842] {aka AC133, CD133, CORD12, MCDR2, MSTP061, PROML1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, KRT5 (keratin 5) [NCBI Gene 3852] {aka CK5, DDD, DDD1, EBS1, EBS2, EBS2A}, KRT19 (keratin 19) [NCBI Gene 3880] {aka CK19, K19, K1CS}, VIM (vimentin) [NCBI Gene 7431], HEY1 (hes related family bHLH transcription factor with YRPW motif 1) [NCBI Gene 23462] {aka BHLHb31, CHF2, HERP2, HESR1, HRT-1, NERP2}, NFIB (nuclear factor I B) [NCBI Gene 4781] {aka CTF, HMGIC/NFIB, MACID, NF-I/B, NF1-B, NFI-B}, KRT16 (keratin 16) [NCBI Gene 3868] {aka CK16, FNEPPK, K16, K1CP, KRT16A, NEPPK}, JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182] {aka AGS, AGS1, AHD, AWS, CD339, CMT2HH}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, CDK6 (cyclin dependent kinase 6) [NCBI Gene 1021] {aka MCPH12, PLSTIRE}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, NOTCH3 (notch receptor 3) [NCBI Gene 4854] {aka CADASIL, CADASIL1, CARASIL1, CASIL, FPLD1, IMF2}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, TP63 (tumor protein p63) [NCBI Gene 8626] {aka AIS, B(p51A), B(p51B), EEC3, KET, LMS}, MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602] {aka Cmyb, c-myb, c-myb_CDS, efg}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, NRARP (NOTCH regulated ankyrin repeat protein) [NCBI Gene 441478], TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, CALM3 (calmodulin 3) [NCBI Gene 808] {aka CALM, CAM1, CAM2, CAMB, CPVT6, CaM}, AQP5 (aquaporin 5) [NCBI Gene 362] {aka AQP-5, PPKB}, JAG2 (jagged canonical Notch ligand 2) [NCBI Gene 3714] {aka HJ2, LGMDR27, SER2}, HEY2 (hes related family bHLH transcription factor with YRPW motif 2) [NCBI Gene 23493] {aka CHF1, GRIDLOCK, GRL, HERP1, HESR2, HRT2}, TPRG1 (tumor protein p63 regulated 1) [NCBI Gene 285386] {aka FAM79B}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072] {aka Ber-Ep4, BerEp4, DIAR5, EGP-2, EGP314, EGP40}, HMSD (histocompatibility minor serpin domain containing) [NCBI Gene 284293] {aka ACC-6, ACC6, C18orf53, HSMD-v}
- **Diseases:** injury to (MESH:D014947), ACC Tumors (MESH:D003528), Oral Adenocarcinoma (MESH:D000230), Cancer (MESH:D009369), salivary gland malignancy (MESH:D012468), hypoxia (MESH:D000860), maxillary sinus tumors (MESH:D008444), metastasis (MESH:D009362), cytotoxicity (MESH:D064420), PDX (MESH:C536408), palatal (MESH:D002972), CNV (OMIM:610141), liver, bladder (MESH:D017093), ACC21-MS (MESH:D009103)
- **Chemicals:** anthracyclines (MESH:D018943), Trypan Blue (MESH:D014343), Triton X-100 (MESH:D017830), Tamoxifen (MESH:D013629), F12 (MESH:C007782), Vincristine (MESH:D014750), Paclitaxel (MESH:D017239), staurosporine (MESH:D019311), TRIzol (MESH:C411644), water (MESH:D014867), 5-Fluorouracil (MESH:D005472), Lapatinib (MESH:D000077341), Cyclophosphamide (MESH:D003520), Doxorubicin (MESH:D004317), Hematoxylin (MESH:D006416), ACCM (-), Cisplatin (MESH:D002945), Y-27632 (MESH:C108830), Regorafenib (MESH:C559147), Alexa Fluor  488 (MESH:C000711379), paraformaldehyde (MESH:C003043), sucrose (MESH:D013395), ATP (MESH:D000255), SYBR Green (MESH:C098022), CO2 (MESH:D002245), DMSO (MESH:D004121), 4',6-diamidino-2-phenylindole (MESH:C007293), Docetaxel (MESH:D000077143), PBS (MESH:D007854), Gemcitabine (MESH:D000093542), Eosin (MESH:D004801)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** N0488A, C18K, G756A
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), ACC21-Pal — Homo sapiens (Human), Pyothorax-associated lymphoma, Cancer cell line (CVCL_X749), ACC22 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_6873), ACC43 — Homo sapiens (Human), Ovarian adenocarcinoma, Cancer cell line (CVCL_DG87), ACC29 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_6872)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939479/full.md

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Source: https://tomesphere.com/paper/PMC12939479