# The Proximity of PD-1−CD103+ Tissue-Resident CD8+ T Cells to Tumor Cells Is Correlated with Improved Clinical Outcomes in Patients with Cholangiocarcinoma

**Authors:** Zhenyu Li, Danping Liu, Jingjing He, Junrui Ma, Muyuan He, Xiaobao Yang, Yanan Zhao, Xuefeng Fei, Dakang Xu, Mengjie Deng

PMC · DOI: 10.3390/cancers18040680 · Cancers · 2026-02-19

## TL;DR

This study shows that the close positioning of specific immune cells near tumor cells in cholangiocarcinoma is linked to better patient outcomes.

## Contribution

The study reveals that the spatial proximity of PD-1−CD103+ CD8+ T cells to tumor cells is a novel prognostic factor in cholangiocarcinoma.

## Key findings

- PD-1−CD103+ CD8+ T cells near tumor cells are associated with improved clinical outcomes.
- These T cells show activation and cytotoxicity gene enrichment compared to exhausted T cells.
- Spatial engagement of these T cells with tumor cells is critical for effective immune surveillance.

## Abstract

Cholangiocarcinoma presents a clinical challenge due to its immunosuppressive tumor microenvironment and therapeutic resistance. This study investigated how the spatial positioning of tissue-resident memory T cells relative to tumor cells is related to anti-tumor immunity and patient survival. We aimed to determine whether the proximity of these immune cells to malignant cells is correlated with patient survival. These findings indicate that the spatial organization of CD8+ tissue-resident memory T cells is a critical prognostic factor, suggesting that effective immune surveillance requires not only the presence of specific T cell subsets but also their precise localization against tumor cells. These insights support the development of immunotherapies that promote effector cell infiltration and engagement within the cholangiocarcinoma tumor microenvironment.

Background/Objectives: Cholangiocarcinoma (CCA) is characterized by a heterogeneous immune microenvironment, where the prognostic significance of CD8+ tissue-resident memory T (TRM) cell activation and spatial positioning remains to be fully elucidated. This study investigated how the activation phenotypes and their spatial distribution relative to tumor cells influence anti-tumor immunosurveillance and predict clinical outcomes in CCA. Methods: Multiplex immunohistochemistry (mIHC) and single-cell RNA sequencing (scRNA-seq) were employed to characterize naïve (PD-1−CD103+CD8+) and exhausted (PD-1+CD103+CD8+) subsets. G-cross function analysis was utilized to quantify the spatial proximity between these specific TRM subsets and tumor cells, correlating the spatial interaction with patient overall survival. Results: scRNA-seq profiling revealed that PD-1−CD103+CD8+ TRM cells were enriched in genes associated with lymphocyte activation and cytotoxicity, while PD-1+CD103+CD8+ TRM cells exhibited an exhaustion signature. Spatially, PD-1−CD103+CD8+ TRM cells exhibited increased interactions with tumor cells, whereas PD-1+CD103+CD8+ TRM cells showed reduced engagement. Therefore, the close proximity of PD-1−CD103+CD8+ TRM cells to tumor cells was identified as a significant predictor of favorable clinical outcomes. Conclusions: The activation state of CD8+ TRM cells combined with their spatial localization constitutes a critical prognostic factor in CCA. Effective anti-tumor immunosurveillance relies on the direct engagement of naïve TRM cells with tumor cells. These findings highlight the potential of PD-1-targeted immunotherapies to remodel the spatial proximity of the tumor microenvironment, potentially promoting the redistribution of effector cells into tumor-proximal regions.

## Linked entities

- **Genes:** PDCD1 (programmed cell death 1) [NCBI Gene 5133], ITGAE (integrin subunit alpha E) [NCBI Gene 3682], CD8A (CD8 subunit alpha) [NCBI Gene 925]
- **Diseases:** Cholangiocarcinoma (MONDO:0019087)

## Full-text entities

- **Genes:** HNF1A (HNF1 homeobox A) [NCBI Gene 574067] {aka HNF-1, TCF1}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, KLRC1 [NCBI Gene 100144622], CSF3R (colony stimulating factor 3 receptor) [NCBI Gene 1441] {aka CD114, GCSFR, SCN7}, TYROBP (transmembrane immune signaling adaptor TYROBP) [NCBI Gene 397405] {aka DAP12}, PRDM1 (PR/SET domain 1) [NCBI Gene 100154284], PLCG2 (phospholipase C gamma 2) [NCBI Gene 100518663], CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, MS4A1 (membrane spanning 4-domains A1) [NCBI Gene 931] {aka B1, Bp35, CD20, CVID5, FMC7, LEU-16}, SELL (selectin L) [NCBI Gene 6402] {aka CD62L, LAM1, LECAM1, LEU8, LNHR, LSEL}, ZNF683 (zinc finger protein 683) [NCBI Gene 257101] {aka Hobit}, FOXP1 (forkhead box P1) [NCBI Gene 100525716], CD14 (CD14 molecule) [NCBI Gene 929], CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, CD69 (CD69 molecule) [NCBI Gene 397165], CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, PDCD1 (programmed cell death 1) [NCBI Gene 100533201], PRF1 (perforin 1) [NCBI Gene 5551] {aka HPLH2, P1, PFP}, LAG3 (lymphocyte activating 3) [NCBI Gene 100125962] {aka CD223, LAG-3}, CXCL13 (C-X-C motif chemokine ligand 13) [NCBI Gene 100524265], LOC100519314 (natural killer cells antigen CD94) [NCBI Gene 100519314], ITGA1 (integrin subunit alpha 1) [NCBI Gene 3672] {aka CD49a, VLA1}, CD1C (CD1c molecule) [NCBI Gene 911] {aka BDCA1, CD1, R7}, TOX (thymocyte selection associated high mobility group box) [NCBI Gene 100155888], FCER1G (Fc epsilon receptor Ig) [NCBI Gene 397406], CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 397286], ZBTB16 (zinc finger and BTB domain containing 16) [NCBI Gene 100625290], CD3E (CD3 epsilon subunit of T-cell receptor complex) [NCBI Gene 916] {aka CD3epsilon, IMD18, T3E, TCRE}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, CCR7 (C-C motif chemokine receptor 7) [NCBI Gene 1236] {aka BLR2, CC-CKR-7, CCR-7, CD197, CDw197, CMKBR7}, ITGAE (integrin subunit alpha E) [NCBI Gene 3682] {aka CD103, HUMINAE}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, ENTPD1 (ectonucleoside triphosphate diphosphohydrolase 1) [NCBI Gene 953] {aka ATP-DPH, ATPDase, CD39, NTPDase-1, SPG64}, TCF7 (transcription factor 7) [NCBI Gene 6932] {aka TCF-1}
- **Diseases:** solid (MESH:D018250), TRM (MESH:D001260), cytotoxic (MESH:D064420), leukemia (MESH:D007938), CCA (MESH:D018281), Tumor (MESH:D009369), injury to (MESH:D014947)
- **Chemicals:** DAPI (MESH:C007293), Formalin (MESH:D005557), citrate (MESH:D019343), H&amp;E (MESH:D006371), Opal (-), ethanol (MESH:D000431), EDTA (MESH:D004492), xylene (MESH:D014992), paraffin (MESH:D010232)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

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## References

34 references — full list in the complete paper: https://tomesphere.com/paper/PMC12939198/full.md

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Source: https://tomesphere.com/paper/PMC12939198