# Autoimmune Ocular Surface Disorders: From Molecular Immunopathogenesis to Regenerative and Surgical Therapeutics

**Authors:** Wojciech Luboń, Marta Świerczyńska, Katarzyna Jadczyk-Sorek, Dorota Wyględowska-Promieńska

PMC · DOI: 10.3390/cells15040378 · Cells · 2026-02-22

## TL;DR

This paper explores how autoimmune eye diseases work at the molecular level and how new therapies combining biology and regenerative medicine can treat them.

## Contribution

It identifies shared molecular pathways in autoimmune ocular diseases and introduces an immunoregenerative therapeutic paradigm integrating biologics and regenerative approaches.

## Key findings

- Autoimmune ocular diseases share molecular pathways involving cytokine imbalance and epithelial-mesenchymal transition.
- New therapies combine biologics like belimumab with regenerative techniques such as stem cell transplantation and amniotic membrane grafting.
- Precision-based therapy targeting cytokine profiles and disease mechanisms is replacing traditional immunosuppression.

## Abstract

What are the main findings?
Autoimmune ocular surface diseases—particularly systemic lupus erythematosus, primary Sjögren’s syndrome, and ocular cicatricial pemphigoid—share convergent molecular pathways involving cytokine imbalance (IFN-I, IL-6, IL-17), epithelial–mesenchymal transition, and complement activation, resulting in chronic epithelial and adnexal injury.Recent therapeutic advances integrate biologic agents (belimumab, anifrolumab, and JAK inhibitors) with regenerative and surgical approaches such as mesenchymal stem cell transplantation, amniotic membrane grafting, and keratoprosthesis, establishing a new immunoregenerative paradigm in ocular surface therapy.

Autoimmune ocular surface diseases—particularly systemic lupus erythematosus, primary Sjögren’s syndrome, and ocular cicatricial pemphigoid—share convergent molecular pathways involving cytokine imbalance (IFN-I, IL-6, IL-17), epithelial–mesenchymal transition, and complement activation, resulting in chronic epithelial and adnexal injury.

Recent therapeutic advances integrate biologic agents (belimumab, anifrolumab, and JAK inhibitors) with regenerative and surgical approaches such as mesenchymal stem cell transplantation, amniotic membrane grafting, and keratoprosthesis, establishing a new immunoregenerative paradigm in ocular surface therapy.

What are the implications of the main findings?
Deciphering molecular immunopathogenesis enables precision-based therapy tailored to cytokine profiles and disease phenotypes, marking a transition from empirical immunosuppression to mechanism-driven intervention.The convergence of multi-omics analytics, artificial intelligence-based diagnostics, and regenerative medicine provides a translational framework for restoring immune homeostasis and achieving true ocular surface regeneration.

Deciphering molecular immunopathogenesis enables precision-based therapy tailored to cytokine profiles and disease phenotypes, marking a transition from empirical immunosuppression to mechanism-driven intervention.

The convergence of multi-omics analytics, artificial intelligence-based diagnostics, and regenerative medicine provides a translational framework for restoring immune homeostasis and achieving true ocular surface regeneration.

Autoimmune ocular surface diseases represent a complex group of disorders in which systemic immune dysregulation triggers chronic inflammation, epithelial dysfunction, and progressive tissue fibrosis. Systemic lupus erythematosus, primary Sjögren’s syndrome, and ocular cicatricial pemphigoid are the principal entities linking systemic autoimmunity to ocular surface pathology. These conditions share convergent mechanisms—including dysregulated cytokine signaling (IFN-I, IL-6, and IL-17), complement activation, and epithelial–mesenchymal transition—culminating in tear film instability and visual impairment. Recent advances in molecular immunology and omics profiling have elucidated disease-specific pathways and identified actionable therapeutic targets. Conventional immunosuppressants such as corticosteroids and cyclosporine remain fundamental, yet emerging biologics targeting BAFF, IFNAR, and JAK/STAT signaling—alongside regenerative strategies employing mesenchymal and induced pluripotent stem cells—are transforming disease management. Parallel innovations in amniotic membrane transplantation, keratoprosthesis, and bioengineered corneal scaffolds integrate structural reconstruction with immune modulation. Furthermore, the convergence of multi-omics analytics, artificial intelligence-assisted diagnostics, and microbiome-based immunomodulation heralds a new era of precision ophthalmology. This review synthesizes current molecular insights, clinical observations, and translational advances that collectively redefine autoimmune ocular surface diseases—from chronic inflammatory disorders into a targetable, regenerative, and potentially reversible spectrum of conditions.

## Linked entities

- **Proteins:** IL6 (interleukin 6), IL17A (interleukin 17A)
- **Chemicals:** cyclosporine (PubChem CID 5284373)
- **Diseases:** systemic lupus erythematosus (MONDO:0007915), ocular cicatricial pemphigoid (MONDO:0008109)

## Full-text entities

- **Genes:** HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, TSHR (thyroid stimulating hormone receptor) [NCBI Gene 7253] {aka CHNG1, LGR3, hTSHR-I}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, GSDMD (gasdermin D) [NCBI Gene 79792] {aka DF5L, DFNA5L, FKSG10, GSDMDC1}, mucin [NCBI Gene 100508689], IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, TYK2 (tyrosine kinase 2) [NCBI Gene 7297] {aka IMD35, JTK1}, POSTN (periostin) [NCBI Gene 10631] {aka OSF-2, OSF2, PDLPOSTN, PN}, FAP (fibroblast activation protein alpha) [NCBI Gene 2191] {aka DPPIV, FAPA, FAPalpha, SIMP}, ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IFNA8 (interferon alpha 8) [NCBI Gene 3445] {aka IFN-alphaB}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, VIM (vimentin) [NCBI Gene 7431], CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, AMT (aminomethyltransferase) [NCBI Gene 275] {aka GCE, GCE2, GCST, GCVT, NKH}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, TNFSF13B (TNF superfamily member 13b) [NCBI Gene 10673] {aka BAFF, BLYS, CD257, TALL-1, TALL1, THANK}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, C3 (complement C3) [NCBI Gene 718] {aka AHUS5, ARMD9, ASP, C3a, C3b, CPAMD1}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, BHLHE40 (basic helix-loop-helix family member e40) [NCBI Gene 8553] {aka BHLHB2, Clast5, DEC1, HLHB2, SHARP-2, SHARP2}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, LCN1 (lipocalin 1) [NCBI Gene 3933] {aka PMFA, TLC, TP, VEGP}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, ITGAL (integrin subunit alpha L) [NCBI Gene 3683] {aka CD11A, EV6, HNA-5, LFA-1, LFA1A}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, C5AR1 (complement C5a receptor 1) [NCBI Gene 728] {aka C5A, C5AR, C5R1, CD88}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, COL17A1 (collagen type XVII alpha 1 chain) [NCBI Gene 1308] {aka BA16H23.2, BP180, BPA-2, BPAG2, ERED, JEB4}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 3480] {aka CD221, IGFIR, IGFR, JTK13}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, TRIM21 (tripartite motif containing 21) [NCBI Gene 6737] {aka RNF81, RO52, Ro/SSA, SSA, SSA1, TRIM21/Ro52}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}
- **Diseases:** LSCD (MESH:D000092423), Hashimoto's disease (MESH:D050031), SLE (MESH:D008180), tear deficiency (MESH:D012167), Stevens-Johnson syndrome (MESH:D013262), Systemic sclerosis (MESH:D012595), pannus (MESH:C537858), Dermatomyositis (MESH:D003882), ischemia (MESH:D007511), proptosis (MESH:D005094), cutaneous lupus (MESH:D008178), conjunctival scarring (MESH:D002921), autoimmune ocular surface injury (MESH:D005131), conjunctival dryness (MESH:D003229), hyperemia (MESH:D006940), opacity (MESH:D003318), eyelid malpositions (MESH:D017760), Autoimmune Ocular Surface Disease (MESH:D001327), cicatricial entropion (MESH:D004774), bacterial superinfections (MESH:D015163), ankyloblepharon (MESH:C565138), scleritis (MESH:D015423), atrophy (MESH:D001284), epithelial failure (MESH:D051437), Autoimmune-mediated disorders of the ocular surface (MESH:D010534), Thyroid-Associated Ophthalmopathy (MESH:D049970), ANCA-mediated (MESH:D056648), endothelial dysfunction (MESH:D014652), Autoimmune dysbiosis (MESH:D064806), opportunistic infections (MESH:D009894), Primary Sjogren's Syndrome (MESH:D012859), regenerative insufficiency (MESH:D000309), complement-mediated microangiopathy (MESH:D020274), KCS (MESH:C537021), corneal melt (MESH:D003316), keratoconjunctivitis (MESH:D007637), vision loss (MESH:D014786), Mitochondrial Dysfunction (MESH:D028361), Autoimmune cicatricial disorders (MESH:D010390), vasculitis (MESH:D014657), injury to (MESH:D014947), Chronic ocular surface inflammation (MESH:D007249), fibrosis (MESH:D005355), Small-fiber neuropathy (MESH:D000071075), tissue injury (MESH:D017695), chronic (MESH:D002908), lupus blepharitis (MESH:D001762), keratoconjunctivitis sicca (MESH:D007638), Immune dysregulation (OMIM:614878), ocular disease (MESH:D005128), tarsal fracture (MESH:D000070604), fungal conjunctivitis (MESH:D009181), corneal ulceration (MESH:D003320), meibomian gland dysfunction (MESH:D000080343), retinal toxicity (MESH:D012164), cataract (MESH:D002386), Autoimmune thyroiditis (MESH:D013967), trichiasis (MESH:D058457), erosions (MESH:D014077), endophthalmitis (MESH:D009877)
- **Chemicals:** cyclophosphamide (MESH:D003520), secukinumab (MESH:C555450), resveratrol (MESH:D000077185), Teprotumumab (MESH:C551399), lifitegrast (MESH:C575157), carotenoids (MESH:D002338), azathioprine (MESH:D001379), rapamycin (MESH:D020123), eculizumab (MESH:C481642), omega-3 fatty acid (MESH:D015525), Quercetin (MESH:D011794), PS (MESH:D010758), iguratimod (MESH:C519076), mycophenolate mofetil (MESH:D009173), Belimumab (MESH:C511911), flavonoids (MESH:D005419), ROS (MESH:D017382), Baricitinib (MESH:C000596027), sphingolipid (MESH:D013107), anifrolumab (MESH:C582345), Lipid (MESH:D008055), Polyphenols (MESH:D059808), ATP (MESH:D000255), CO2 (MESH:D002245), steroid (MESH:D013256), Selenium (MESH:D012643), deucravacitinib (MESH:C000628674), rituximab (MESH:D000069283), HCQ (MESH:D006886), CsA (MESH:D016572), KPro (-), curcumin (MESH:D003474)
- **Species:** Lactobacillus (genus) [taxon 1578], Demodex (genus) [taxon 188544], Staphylococcus epidermidis (species) [taxon 1282], Homo sapiens (human, species) [taxon 9606], Corynebacterium (genus) [taxon 1716]

## Full text

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## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12939197/full.md

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Source: https://tomesphere.com/paper/PMC12939197