# SMARCA4-Deficient Carcinomas of the Small Intestine: A Systematic Review

**Authors:** Aaqid Syed, Yanis Boumber, Midhun Malla

PMC · DOI: 10.3390/curroncol33020107 · Current Oncology · 2026-02-10

## TL;DR

This paper reviews rare, aggressive small intestine cancers caused by loss of the SMARCA4 gene, highlighting their poor prognosis and the need for early detection and specialized treatment.

## Contribution

The study systematically reviews SMARCA4-deficient carcinomas of the small intestine, a rare and understudied cancer subtype.

## Key findings

- Most patients were middle-aged men with advanced disease and nonspecific symptoms.
- Tumors showed aggressive features and poor survival, with limited response to immune checkpoint inhibitors.
- Early diagnosis and SMARCA4 testing are critical for guiding treatment and referral to specialized centers.

## Abstract

Cancers of the small intestine are rare, and some aggressive forms are difficult to diagnose and treat. One such form involves loss of a gene called SMAR-CA4, which normally helps control how cells grow and divide. When this gene is lost, cancers tend to grow quickly and respond poorly to standard treatments. Most knowledge about SMARCA4-deficient cancers comes from tumors in the chest and very little is known about those arising in the small intestine. In this study, we reviewed all published cases of SMARCA4-deficient small intestine cancer to better understand how these tumors present, how they look under the microscope, how they behave and how patients respond to treatment. We found that most patients were middle-aged men who presented with advanced disease and vague symptoms such as abdominal pain or bowel obstruction. These cancers showed highly aggressive features and were associated with short survival in most cases. Surgery combined with chemotherapy offered longer survival only in patients diagnosed early. Recognizing this rare cancer early and testing for SMARCA4 loss is critical, as it may guide treatment decisions and referral to specialized centers.

Purpose: SMARCA4-deficient carcinomas are rare, aggressive malignancies characterized by loss of BRG1, a core component of the SWI/SNF chromatin remodeling complex. These typically arise in the chest, but recent case reports suggest rare involvement of the gastrointestinal tract, particularly the small intestine. This review aims to consolidate the available literature on SMARCA4-deficient carcinomas of the small intestine, highlighting their clinical, histopathological, molecular, and therapeutic features. Design: A systematic review of PubMed was conducted through March 2025 to identify all published cases of primary SMARCA4-deficient carcinomas of the small intestine. Inclusion criteria required immunohistochemical or molecular confirmation of SMARCA4/BRG1 loss. Studies describing metastases, non-small intestine primaries, or lacking molecular data were excluded. Ten eligible cases were analyzed in detail. Results: Patients were predominantly male (9 out of 10) with a median age of 54 years. Most carcinomas arose in the duodenum and patients frequently presented with nonspecific symptoms and advanced-stage disease. Histologically, tumors demonstrated undifferentiated or rhabdoid features with high mitotic activity and extensive necrosis. Immunohistochemistry confirmed loss of SMARCA4, while several cases also showed SMARCA2 loss. Molecular profiling revealed congruent mutations in TP53 and CTNNB1, among oncogenic drivers. While some patients with localized disease achieved prolonged survival after surgery and adjuvant chemotherapy, those with metastatic disease had limited responses to immune checkpoint inhibitors, despite PD-L1 positivity in a subset. Overall survival ranged from 2 to 29 months. Conclusions: SMARCA4-deficient carcinomas of the small intestine represent a distinct, high-grade malignancy with poor prognosis and limited therapeutic options. Prompt recognition, SMARCA4 testing, and referral to specialized centers are essential. Prospective studies are needed to guide therapy and explore targeted approaches in this challenging carcinoma subtype.

## Linked entities

- **Genes:** SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597], SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597], TP53 (tumor protein p53) [NCBI Gene 7157], CTNNB1 (catenin beta 1) [NCBI Gene 1499], SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 6595]
- **Diseases:** carcinoma (MONDO:0004993), small intestine cancer (MONDO:0000956)

## Full-text entities

- **Genes:** PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, RAD52 (RAD52 DNA repair protein) [NCBI Gene 5893], VIM (vimentin) [NCBI Gene 7431], SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598] {aka BAF47, CSS3, INI-1, INI1, MRD15, PPP1R144}, ADA2 (adenosine deaminase 2) [NCBI Gene 51816] {aka ADGF, CECR1, IDGFL, PAN, SNEDS, VAIHS}, INTS1 (integrator complex subunit 1) [NCBI Gene 26173] {aka INT1, NDCAGF, NET28}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 6595] {aka BAF190, BIS, BRM, NCBRS, SAMRCA2, SNF2}, ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289] {aka B120, BAF250, BAF250a, BM029, C1orf4, CSS2}, MYH9 (myosin heavy chain 9) [NCBI Gene 4627] {aka BDPLT6, DFNA17, EPSTS, FTNS, MATINS, MHA}, NCOR1 (nuclear receptor corepressor 1) [NCBI Gene 9611] {aka N-CoR, N-CoR1, PPP1R109, TRAC1, hN-CoR}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, CDX2 (caudal type homeobox 2) [NCBI Gene 486028], MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, KRT7 (keratin 7) [NCBI Gene 477602] {aka CK7}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, ERBB3 (erb-b2 receptor tyrosine kinase 3) [NCBI Gene 2065] {aka ErbB-3, FERLK, HER3, LCCS2, MDA-BF-1, VSCN1}, S100A1 (S100 calcium binding protein A1) [NCBI Gene 6271] {aka S100, S100-alpha, S100A}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}
- **Diseases:** lung cancer (MESH:D008175), Cancers (MESH:D009369), stable (MESH:D060050), endometrioid carcinomas of the uterus (MESH:D018269), adenocarcinoma (MESH:D000230), abdominal pain (MESH:D015746), Cancers of the small intestine (MESH:D007414), Undifferentiated carcinoma of the small intestine (MESH:D002277), Small Bowel Obstruction (MESH:D007409), inflammation (MESH:D007249), bowel obstruction (MESH:D012778), injury to (MESH:D014947), disease (MESH:D004194), Node (MESH:D012804), small bowel carcinoma (MESH:D018288), hereditary syndromes (MESH:D009386), pain (MESH:D010146), gastric, colonic, or rectal carcinomas (MESH:D003110), undifferentiated (MESH:C580334), I (MESH:D006969), lung, thoracic, and gynecologic malignancies (MESH:D005833), Rhabdoid (MESH:D018335), thoracic and gastrointestinal (MESH:D005767), Metastasis (MESH:D009362), Deficient (MESH:D007153), intussusception (MESH:D007443), colorectal cancer (MESH:D015179), OS (MESH:D011475), MSI-H (MESH:D000848), necrosis (MESH:D009336), solid carcinomas (MESH:D018250), Carcinomas of the Small Intestine (MESH:C538260), Lymph Node (MESH:D000072717), inflammatory bowel disease (MESH:D015212), GI malignancies (MESH:D005770), lung, ovarian, or soft tissue (MESH:D010051)
- **Chemicals:** Irinotecan (MESH:D000077146), Paclitaxel (MESH:D017239), trastuzumab (MESH:D000068878), platinum (MESH:D010984), ipilimumab (MESH:D000074324), Bevacizumab (MESH:D000068258), oxaliplatin (MESH:D000077150), atezolizumab (MESH:C000594389), Capecitabine (MESH:D000069287), pembrolizumab (MESH:C582435), Cisplatin (MESH:D002945), FOLFIRI (-), FOLFOX (MESH:C410216), nivolumab (MESH:D000077594), tazemetostat (MESH:C000593333), XELOX (MESH:C519688)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12939110/full.md

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Source: https://tomesphere.com/paper/PMC12939110