# WBP2 Attenuates Metformin Response in HER2-Positive Breast Cancer Cells by Repressing AMPK Activation and Inducing a Lower AMP:ATP Ratio State Through Enhanced ATP Production

**Authors:** Hexian Lin, Shin-Ae Kang, Fei Xie, Yvonne Xinyi Lim, Sock Hong Seah, Amir Sabbaghian, Ssu-Yi Lu, Ting Gang Chew, Lih-Wen Deng, Shu Wang, E-Shyong Tai, Yoon Pin Lim

PMC · DOI: 10.3390/cells15040381 · Cells · 2026-02-23

## TL;DR

WBP2 reduces the effectiveness of metformin in HER2-positive breast cancer by altering energy metabolism and AMPK activation.

## Contribution

WBP2 is identified as a novel regulator of metformin response in HER2+ breast cancer through its impact on AMPK and ATP production.

## Key findings

- WBP2 inhibits metformin-induced AMPK activation in HER2+ breast cancer cells.
- WBP2 promotes glycolytic capacity and mitochondrial respiration, lowering the AMP:ATP ratio.
- Clinical analysis supports a negative correlation between WBP2 and activated AMPK in HER2+ breast cancer.

## Abstract

What are the main findings?
WBP2 inhibits the metformin response of HER2+ breast cancer cells.WBP2 represses metformin-induced AMPK activation while concomitantly decreasing AMP:ATP ratio through promoting glycolytic capacity and mitochondria respiration.

WBP2 inhibits the metformin response of HER2+ breast cancer cells.

WBP2 represses metformin-induced AMPK activation while concomitantly decreasing AMP:ATP ratio through promoting glycolytic capacity and mitochondria respiration.

What are the implications of the main findings?
WBP2 is a potential biomarker for predicting response and facilitates repurposing of metformin for cancer therapy.

WBP2 is a potential biomarker for predicting response and facilitates repurposing of metformin for cancer therapy.

Metformin is an antidiabetic drug that has been tested widely as an anti-cancer agent. However, data from clinical trials have been mixed. Evidence for metformin’s efficacy in HER2+ breast cancer exists. Hence, we evaluated whether WBP2, a HER2-coamplified gene, can regulate the response of HER2+ breast cancer to metformin. Identification of biomarkers for predicting metformin response has implications in repurposing metformin for precision oncology. The effect of WBP2 on breast cancer response to metformin was studied using in vitro and mouse models. The mechanism of WBP2 on metformin-induced AMPK activation was elucidated, and its co-expression with p-AMPK was examined in clinical specimens using IHC. RNA-seq analyses were performed to elucidate WBP2’s mechanism in energy metabolism. WBP2 inhibited the metformin response of HER2+ breast cancer in vitro and in vivo. These effects were concomitant with WBP2-mediated repression of metformin-induced AMPK activation and mTOR inhibition in HER2+ breast cancer cells, a lower AMP:ATP ratio state, and enhanced glycolytic capacity and mitochondria respiration. Analysis of HER2-positive breast cancer samples supports the negative correlation between WBP2 expression and activated AMPK observed in vitro. RNA-seq analysis revealed the potential mechanism of WBP2 in regulating ATP production processes and preferential effect of WBP2 on metformin response in HER2+ breast cancer. This study reported a novel role of WBP2 in cancer metabolism and energetics that contributes new insights into the molecular etiology of cancer. WBP2 may be a biomarker for patient stratification, paving the way towards repurposing metformin for precision oncology.

## Linked entities

- **Genes:** WBP2 (WW domain binding protein 2) [NCBI Gene 23558], ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064], PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475]
- **Chemicals:** metformin (PubChem CID 4091), AMP (PubChem CID 6083), ATP (PubChem CID 5957)
- **Diseases:** breast cancer (MONDO:0004989), HER2-positive breast cancer (MONDO:0006244)

## Full-text entities

- **Genes:** EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, PGK1 (phosphoglycerate kinase 1) [NCBI Gene 5230] {aka HEL-S-68p, MIG10, PGKA}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, SLC25A5 (solute carrier family 25 member 5) [NCBI Gene 292] {aka 2F1, AAC2, ANT2, T2, T3}, LONP1 (lon peptidase 1, mitochondrial) [NCBI Gene 9361] {aka CODASS, LON, LONP, LonHS, PIM1, PRSS15}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, MRPL47 (mitochondrial ribosomal protein L47) [NCBI Gene 57129] {aka CGI-204, L47mt, MRP-L47, NCM1, uL29m}, TAFAZZIN (tafazzin, phospholipid-lysophospholipid transacylase) [NCBI Gene 6901] {aka BTHS, CMD3A, EFE, EFE2, G4.5, LVNCX}, MRPS28 (mitochondrial ribosomal protein S28) [NCBI Gene 28957] {aka COXPD47, HSPC007, MRP-S28, MRP-S35, MRPS35}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, MTFR1 (mitochondrial fission regulator 1) [NCBI Gene 9650] {aka CHPPR, FAM54A2}, PRKAA2 (protein kinase AMP-activated catalytic subunit alpha 2) [NCBI Gene 5563] {aka AMPK, AMPK2, AMPKa2, PRKAA}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, ACSS2 (acyl-CoA synthetase short chain family member 2) [NCBI Gene 55902] {aka ACAS2, ACECS, ACS, ACSA, AceCS1, dJ1161H23.1}, Erbb2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 13866] {aka Erbb-2, HER-2, HER2, Neu, c-erbB2, c-neu}, WBP2 (WW domain binding protein 2) [NCBI Gene 23558] {aka DFNB107, GRAMD6, WBP-2}, SUCLA2 (succinate-CoA ligase ADP-forming subunit beta) [NCBI Gene 8803] {aka A-BETA, A-SCS, LINC00444, MTDPS5, SCS-betaA}, UQCRFS1 (ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1) [NCBI Gene 7386] {aka ISP, MC3DN10, RIP1, RIS1, RISP, UQCR5}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, TOMM40 (translocase of outer mitochondrial membrane 40) [NCBI Gene 10452] {aka C19orf1, D19S1177E, PER-EC1, PEREC1, TOM40}, Wbp2 (WW domain binding protein 2) [NCBI Gene 22378], SLC2A14 (solute carrier family 2 member 14) [NCBI Gene 144195] {aka GLUT14, SLC2A3P3}
- **Diseases:** metabolic disease (MESH:D008659), Tumor (MESH:D009369), diabetic (MESH:D003920), injury to (MESH:D014947), invasive ductal carcinoma breast cancer (MESH:D018270), TNBC (MESH:D064726), BC (MESH:D001943), TNM (MESH:D008207), T2D (MESH:D003924), Ductal Carcinoma (MESH:D044584), cytotoxic (MESH:D064420), tumorigenic (MESH:D002471), metastasis (MESH:D009362)
- **Chemicals:** FCCP (MESH:D002259), HCl (MESH:D006851), SDS (MESH:D012967), acetyl-coA (MESH:D000105), nucleotide (MESH:D009711), 3-phosphoglycerate (MESH:C005156), Metformin (MESH:D008687), adenine nucleotide (MESH:D000227), Polymer (MESH:D011108), polyacrylamide (MESH:C016679), streptomycin (MESH:D013307), TCA (MESH:D014233), ADP (MESH:D000244), trastuzumab (MESH:D000068878), 2-DG (MESH:D003847), nitrogen (MESH:D009584), carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (MESH:C108897), antimycin (MESH:C032456), 17beta-estradiol (MESH:D004958), DPBS (MESH:C012939), NP-40 (MESH:C010615), oxygen (MESH:D010100), 1,3-bisphosphoglycerate (MESH:C015891), phosphate (MESH:D010710), Sodium deoxycholate (MESH:D003840), NaCl (MESH:D012965), succinate (MESH:D019802), paraffin (MESH:D010232), CPI-613 (MESH:C568850), oligomycin (MESH:D009840), glucose (MESH:D005947), DAB (MESH:C000469), PBS (MESH:D007854), L-glutamine (MESH:D005973), CO2 (MESH:D002245), rotenone (MESH:D012402), ATP (MESH:D000255), AMP (MESH:D000249), succinyl-CoA (MESH:C012046), balsam (MESH:D001453), hematoxylin (MESH:D006416), penicillin (MESH:D010406), puromycin (MESH:D011691), phenformin (MESH:D010629), doxorubicin (MESH:D004317), hydrogen peroxide (MESH:D006861), BT-474 (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs11212617
- **Cell lines:** MDA-MB-468 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0419), ZR-75-30 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1661), BT-20 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0178), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), MDA-MB-453 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0418), BT-474 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0179), 1E — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_L871), SK-BR-3 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0033), BT-549 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1092), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12939031/full.md

## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC12939031/full.md

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Source: https://tomesphere.com/paper/PMC12939031