# Transcriptome and Metabolome Analyses Uncover Genes and Pathways Linking Growth Trajectories to Cardiometabolic Risk Markers in Childhood

**Authors:** Reena Perchard, Terence Garner, Lucy E. Higgins, Philip G. Murray, Amirul Roslan, Edward D. Johnstone, Adam Stevens, Peter E. Clayton

PMC · DOI: 10.3390/cimb48020238 · Current Issues in Molecular Biology · 2026-02-23

## TL;DR

This study links fetal growth patterns to later cardiometabolic risk by analyzing gene and metabolite activity in children.

## Contribution

The study identifies novel genes and pathways, such as ARG1 and LATS1, connecting fetal growth to cardiometabolic risk markers.

## Key findings

- Fetal weight trajectory correlates with BMI and body measurements in early infancy.
- ARG1 and LATS1 are key genes in pathways linking growth to blood pressure differences.
- Ornithine and the arginine-nitric oxide pathway are implicated in cardiometabolic risk.

## Abstract

Small for gestational age (SGA) is often used as a proxy for fetal growth restriction (FGR), yet not all FGR fetuses are born SGA. SGA individuals, particularly those with catch-up growth, have increased cardiometabolic risk. We therefore studied infants and children from pregnancies at increased FGR risk, irrespective of birthweight. Two cohorts enriched for suboptimal fetal growth were recruited: an infant cohort (N = 80) to examine relationships between fetal weight trajectory and postnatal growth and a cohort of children aged 3–7 years (N = 80), 31 of whom provided blood samples for transcriptome and metabolome analyses. In infants, fetal weight trajectory correlated negatively with BMI change from birth to three months (R = −0.40, p = 0.004) and six months (R = −0.38, p = 0.012), as well as with skinfold, abdominal and arm circumferences. In children, supervised transcriptome analysis highlighted a pathway including ARG1. Unsupervised analysis had previously identified two SBP-differentiated groups; novel findings include LATS1, implicated in SBP GWAS, as the most significant gene, and GHRL, suggesting appetite-regulation mechanisms underlie SBP differences. Ornithine, a differentially expressed metabolite between fetal and childhood weight trajectory quartiles, together with ARG1, suggested involvement of the arginine-nitric oxide pathway. Early life indicators of cardiometabolic risk have been elucidated, highlighting pathways to inform future prevention.

## Linked entities

- **Genes:** ARG1 (arginase 1) [NCBI Gene 383], LATS1 (large tumor suppressor kinase 1) [NCBI Gene 9113], GHRL (ghrelin and obestatin prepropeptide) [NCBI Gene 51738]
- **Chemicals:** ornithine (PubChem CID 389)

## Full-text entities

- **Genes:** NPY (neuropeptide Y) [NCBI Gene 4852] {aka PYY4}, AFP (alpha fetoprotein) [NCBI Gene 174] {aka AFPD, FETA, HPAFP}, NOS3 (nitric oxide synthase 3) [NCBI Gene 4846] {aka EC-NOS, ECNOS, MYMY8, NOSIII, cNOS, eNOS}, RBFOX2 (RNA binding fox-1 homolog 2) [NCBI Gene 23543] {aka FOX2, Fox-2, HNRBP2, HRNBP2, RBM9, RTA}, GHRL (ghrelin and obestatin prepropeptide) [NCBI Gene 51738] {aka MTLRP}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, PAPPA (pappalysin 1) [NCBI Gene 5069] {aka ASBABP2, DIPLA1, IGFBP-4ase, PAPA, PAPP-A, PAPPA1}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, ANXA3 (annexin A3) [NCBI Gene 306] {aka ANX3}, DUSP1 (dual specificity phosphatase 1) [NCBI Gene 1843] {aka CL100, HVH1, MKP-1, MKP1, PTPN10}, DBP (D-box binding PAR bZIP transcription factor) [NCBI Gene 1628] {aka DABP, taxREB302}, LATS1 (large tumor suppressor kinase 1) [NCBI Gene 9113] {aka WARTS, wts}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, GCK (glucokinase) [NCBI Gene 2645] {aka FGQTL3, GK, GLK, HHF3, HK4, HKIV}, ARG1 (arginase 1) [NCBI Gene 383]
- **Diseases:** insulin resistance (MESH:D007333), Hypertension (MESH:D006973), undernutrition (MESH:D044342), LBW (MESH:D001724), urea cycle disorders (MESH:D056806), T2D (MESH:D003924), impaired glucose control (MESH:D007174), adiposity (MESH:D018205), asthma (MESH:D001249), lung cancer (MESH:D008175), endothelial dysfunction (MESH:D014652), diabetes (MESH:D003920), cancers (MESH:D009369), injury to (MESH:D014947), congenital anomaly (MESH:D000013), metabolic syndrome (MESH:D024821), FGR (MESH:D005317), SBP (MESH:D007022), seizures (MESH:D012640), hyperphagia (MESH:D006963), stroke (MESH:D020521), weight gain (MESH:D015430), SGA (MESH:D016640), obesity (MESH:D009765)
- **Chemicals:** L-arginine (MESH:D001120), urea (MESH:D014508), amino acid (MESH:D000596), 1-D myoinositol (-), Ornithine (MESH:D009952), glucose (MESH:D005947), inositol (MESH:D007294), calcium (MESH:D002118), lipid (MESH:D008055), steroid (MESH:D013256), triglycerides (MESH:D014280), nitrate (MESH:D009566), inositol 1-phosphate (MESH:C002647), cholesterol (MESH:D002784), NO (MESH:D009569), inositol 1,2-cyclic phosphate (MESH:C010199), Phospholipids (MESH:D010743)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs62434129, rs17080102

## Full text

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## Figures

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## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12939017/full.md

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Source: https://tomesphere.com/paper/PMC12939017