# Genotype-Specific Rhizosphere Microbiome Assembly Mediates Biochar-Induced Salt Tolerance in Sorghum

**Authors:** Yingying Xu, Lingyu Zhang, Zhichang Gao, Zhijian Shi, Peng Li, Ruitao Xu, Jianghui Cui

PMC · DOI: 10.3390/cimb48020186 · Current Issues in Molecular Biology · 2026-02-06

## TL;DR

Biochar helps sorghum tolerate salt stress by shaping specific soil microbes that support each plant type differently.

## Contribution

This study reveals how biochar enables genotype-specific microbiome assembly to enhance salt tolerance in sorghum.

## Key findings

- Biochar reduced soil salt levels and improved soil fertility in salt-stressed sorghum.
- Salt-sensitive and salt-tolerant sorghum genotypes assembled distinct, stress-resistant microbial communities with biochar.
- Biochar-shaped microbial modules correlated with increased plant biomass and stable microbial networks.

## Abstract

Sorghum genotypes differentially shape their rhizosphere microbiomes to cope with salt stress; however, the modulatory role of biochar in this genotype-specific plant–microbe interplay remains unclear. In this study, we investigated how salt-sensitive (Henong 16, HN16) and salt-tolerant (Jizaonuo 1, JZN) sorghum genotypes leverage biochar to assemble distinct functional rhizosphere microbiomes under salt stress (5 g kg−1 NaCl). Biochar application (20 g kg−1) alleviated ionic stress by reducing soil electrical conductivity (EC decreased by 46% in HN16) and enhanced soil fertility through increased organic matter (SOM increased by 26% in JZN). 16S rRNA gene sequencing revealed that biochar selectively enriched genotype-specific, stress-resistant taxa. The salt-sensitive HN16 primarily recruited Sporosarcina (a genus reported to exhibit salt tolerance and nitrogen-fixing capabilities) and Intrasporangiaceae, thereby rapidly establishing a rhizosphere barrier. In contrast, the salt-tolerant JZN consistently enriched Salinimicrobium (an extreme halophile) and the family LWQ8, forming more complex and stable co-occurrence networks with a higher proportion of positive correlations (81%). Plant genotype was the primary determinant of core microbiome assembly: Bacillus and Arthrobacter dominated in HN16, whereas Sphingomonas and Streptomyces prevailed in JZN. Biochar reinforced this genotype-specific assembly by modulating soil pH and SOM, which were identified as key drivers of microbial community divergence. Importantly, these biochar-shaped microbial modules showed significant positive correlations with increased plant biomass. Our findings demonstrate that biochar enhances salt tolerance not merely by improving soil properties, but primarily by facilitating the deterministic assembly of genotype-specific, functional rhizosphere microbiomes. This mechanistic insight shifts the paradigm of biochar from a universal soil amendment to a precision tool for rhizosphere engineering, providing a genotype-aware foundation for enhancing salinity resilience in sustainable agriculture.

## Linked entities

- **Chemicals:** NaCl (PubChem CID 5234)
- **Species:** Sorghum (taxon 4557)

## Full-text entities

- **Diseases:** injury to (MESH:D014947)
- **Chemicals:** arsenic (MESH:D001151), Biochar (MESH:C540010), iodine (MESH:D007455), T1 (MESH:C103828), HN16 (-), potassium (MESH:D011188), Na+ (MESH:D012964), potassium dichromate (MESH:D011192), water (MESH:D014867), nitrogen (MESH:D009584), carbon (MESH:D002244), NaCl (MESH:D012965), vermiculite (MESH:C003760), phosphorus (MESH:D010758), Salt (MESH:D012492), oxygen (MESH:D010100)
- **Species:** Sporosarcina (genus) [taxon 1569], Streptomyces (genus) [taxon 1883], Bacillus (genus) [taxon 55087], Sorghum bicolor (broomcorn, species) [taxon 4558], Pontibacter (genus) [taxon 323449], Homo sapiens (human, species) [taxon 9606], Arthrobacter (genus) [taxon 1663], Nocardioides (genus) [taxon 1839], Deinococcus (genus) [taxon 1298], Sphingomonas (genus) [taxon 13687], Salinimicrobium (genus) [taxon 561367], Paenarthrobacter (genus) [taxon 1742992]
- **Cell lines:** HCK — Homo sapiens (Human), Transformed cell line (CVCL_6F04), JCK — Homo sapiens (Human), Cholangiocarcinoma, Cancer cell line (CVCL_M270)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938964/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938964/full.md

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Source: https://tomesphere.com/paper/PMC12938964