# Emerging Protein Targets in Triple-Negative Breast Cancer: Beyond Conventional Therapy

**Authors:** Andrea Previtali, Isabella Guardamagna, Silvia Calandra, Maryam Shakarami, Leonardo Lonati, Cecilia Riani, Rossella Semerano, Giorgio Baiocco, Maristella Maggi, Claudia Scotti

PMC · DOI: 10.3390/cancers18040618 · Cancers · 2026-02-13

## TL;DR

This review explores new treatment strategies for triple-negative breast cancer, focusing on emerging protein targets and therapies beyond conventional approaches.

## Contribution

The paper provides an updated and novel overview of the evolving therapeutic landscape for triple-negative breast cancer.

## Key findings

- Recent advances in proteomics and targeted protein degradation are expanding actionable molecules in TNBC.
- Emerging therapies include immune checkpoint inhibitors, PARP inhibitors, and antibody–drug conjugates.
- Integrative omics approaches are identifying novel targets influenced by tumor metabolism and microenvironment.

## Abstract

Triple-negative breast cancer is one of the most aggressive types of breast cancer and is especially difficult to treat because it does not respond to standard therapies. Although chemotherapy and some immune-based treatments can help certain patients, many tumors eventually stop responding. As a result, there is an urgent need to identify new treatment strategies that are more effective and long-lasting. This review describes recent progress in understanding how triple-negative breast cancer grows and survives, and how this knowledge is being used to develop new therapies. It covers treatments that help the immune system attack cancer cells, drugs that target weaknesses in cancer cell DNA repair, and antibody-based therapies that deliver toxic agents directly to tumors. The review also explains how large-scale molecular studies are revealing new drug targets and how the tissue surrounding the tumor affects treatment success. Finally, it highlights innovative radiation approaches designed to work together with modern drug therapies to improve patient outcomes.

Triple-negative breast cancer (TNBC) remains one of the most aggressive and therapeutically challenging breast cancer subtypes, lacking expression of estrogen receptor, progesterone receptor, and HER2. Conventional chemotherapy and immune checkpoint inhibitors provide some benefit, but resistance and relapse are frequent. The search for novel targets has therefore become central to developing more effective and durable therapies. Recent advances in proteomics, structural biology, and targeted protein degradation are rapidly expanding the repertoire of actionable molecules in TNBC. This review summarizes current and emerging therapeutic strategies for TNBC, with a focus on targeted approaches designed to address tumor heterogeneity and resistance mechanisms. To this end, recent advances in targeted therapies are examined, including immune checkpoint inhibitors, PARP inhibitors, Trop-2–directed antibody–drug conjugates, anti-angiogenic agents, PI3K/Akt/mTOR pathway inhibitors, androgen receptor antagonists, and CDK4/6 inhibitors, highlighting results from completed and ongoing clinical trials. In addition, we explore novel targets identified through integrative omics approaches, as well as the role of the tumor metabolism and microenvironment in modulating therapeutic efficacy. Finally, we outline innovative radiotherapy strategies based on targeted radiation delivery and biological integration with systemic therapies. Collectively, this review provides an updated and novel overview of the evolving TNBC therapeutic landscape and highlights promising directions for the development of next-generation, biomarker-driven treatment strategies aimed at improving patient outcomes, maintaining a broad perspective on a very large class of targets.

## Linked entities

- **Proteins:** PARP1 (poly(ADP-ribose) polymerase 1), Cdk4 (Cyclin-dependent kinase 4), PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), AKT1 (AKT serine/threonine kinase 1), MTOR (mechanistic target of rapamycin kinase), TACSTD2 (tumor associated calcium signal transducer 2)
- **Diseases:** triple-negative breast cancer (MONDO:0005494), breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** PELP1 (proline, glutamate and leucine rich protein 1) [NCBI Gene 27043] {aka MNAR, P160}, RHOA (ras homolog family member A) [NCBI Gene 387] {aka ARH12, ARHA, EDFAOB, RHO12, RHOH12}, RET (ret proto-oncogene) [NCBI Gene 5979] {aka CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1}, ATP8B1 (ATPase phospholipid transporting 8B1) [NCBI Gene 5205] {aka ATPIC, BRIC, FIC1, ICP1, PFIC, PFIC1}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, GGH (gamma-glutamyl hydrolase) [NCBI Gene 8836] {aka GATD10, GH}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CHEK2 (checkpoint kinase 2) [NCBI Gene 11200] {aka CDS1, CHK2, HuCds1, LFS2, PP1425, RAD53}, FAP (fibroblast activation protein alpha) [NCBI Gene 2191] {aka DPPIV, FAPA, FAPalpha, SIMP}, ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, KHDRBS1 (KH RNA binding domain containing, signal transduction associated 1) [NCBI Gene 10657] {aka Sam68, p62, p68}, Ddr2 (discoidin domain receptor family, member 2) [NCBI Gene 18214] {aka Ntrkr3, tyro10}, FLNC (filamin C) [NCBI Gene 2318] {aka ABP-280, ABP280A, ABPA, ABPL, ARVC15, CMD1PP}, EPHB3 (EPH receptor B3) [NCBI Gene 2049] {aka EK2, ETK2, HEK2, TYRO6}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, ABCC1 (ATP binding cassette subfamily C member 1 (ABCC1 blood group)) [NCBI Gene 4363] {aka ABC29, ABCC, DFNA77, GS-X, MRP, MRP1}, FOXC1 (forkhead box C1) [NCBI Gene 2296] {aka ARA, ASGD3, FKHL7, FREAC-3, FREAC3, IGDA}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, NECTIN4 (nectin cell adhesion molecule 4) [NCBI Gene 81607] {aka EDSS1, LNIR, PRR4, PVRL4, nectin-4}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, VTCN1 (V-set domain containing T cell activation inhibitor 1) [NCBI Gene 79679] {aka B7-H4, B7H4, B7S1, B7X, B7h.5, PRO1291}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, KDM1A (lysine demethylase 1A) [NCBI Gene 23028] {aka AIMAH3, AOF2, BHC110, CPRF, KDM1, LSD1}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, EPHB2 (EPH receptor B2) [NCBI Gene 2048] {aka BDPLT22, CAPB, DRT, EK5, EPHT3, ERK}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, COP1 (COP1 E3 ubiquitin ligase) [NCBI Gene 64326] {aka CFAP78, FAP78, RFWD2, RNF200}, HGS (hepatocyte growth factor-regulated tyrosine kinase substrate) [NCBI Gene 9146] {aka HRS}, IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, SMO (smoothened, frizzled class receptor) [NCBI Gene 6608] {aka CRJS, FZD11, Gx, PHLS, SMOH}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, ELOB (elongin B) [NCBI Gene 6923] {aka SIII, TCEB2}, KHDRBS2 (KH RNA binding domain containing, signal transduction associated 2) [NCBI Gene 202559] {aka KHDRBS2-OT, KHDRBS2-OT1, SLM-1, SLM1}, Gls2 (glutaminase 2 (liver, mitochondrial)) [NCBI Gene 216456] {aka A330074B06Rik, GA, GLS, Lga}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, ARHGAP35 (Rho GTPase activating protein 35) [NCBI Gene 2909] {aka GRF-1, GRLF1, P190-A, P190A, p190ARhoGAP, p190RhoGAP}, VAV2 (vav guanine nucleotide exchange factor 2) [NCBI Gene 7410] {aka VAV-2}, CSF3 (colony stimulating factor 3) [NCBI Gene 1440] {aka C17orf33, CSF3OS, GCSF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Parp1 (poly (ADP-ribose) polymerase family, member 1) [NCBI Gene 11545] {aka 5830444G22Rik, ARTD1, Adprp, Adprt1, PARP, PPOL}, LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, CD276 (CD276 molecule) [NCBI Gene 80381] {aka 4Ig-B7-H3, B7-H3, B7H3, B7RP-2}, TOP1MT (DNA topoisomerase I mitochondrial) [NCBI Gene 116447], PGF (placental growth factor) [NCBI Gene 5228] {aka D12S1900, PGFL, PIGF, PLGF, PlGF-2, SHGC-10760}, TYMS (thymidylate synthetase) [NCBI Gene 7298] {aka DKCD, HST422, TMS, TS}, EPHA1 (EPH receptor A1) [NCBI Gene 2041] {aka EPH, EPHT, EPHT1}, CPT1A (carnitine palmitoyltransferase 1A) [NCBI Gene 1374] {aka CPT I, CPT1, CPT1-L, CPTI-L, L-CPT1}, Slc38a2 (solute carrier family 38, member 2) [NCBI Gene 67760] {aka 5033402L14Rik, ATA2, SAT2, SNAT2, mKIAA1382}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PTCH1 (patched 1) [NCBI Gene 5727] {aka BCNS, BCNS1, NBCCS, PTC, PTC1, PTCH}
- **Diseases:** Hypoxia (MESH:D000860), oral squamous cell carcinoma (MESH:D000077195), NSCLC (MESH:D002289), triple (MESH:C536008), Merkel cell carcinoma (MESH:D015266), diarrhea (MESH:D003967), MSL (MESH:C535700), tumorigenesis (MESH:D063646), fatigue (MESH:D005221), MES (MESH:C536133), BL (MESH:D002051), papillary thyroid cancer (MESH:D000077273), urothelial, gastric, prostate and renal cancer (MESH:D013274), lung adenocarcinoma (MESH:D000077192), hypoxic (MESH:D002534), BLIS (MESH:D000163), cancers (MESH:D009369), adenocarcinomas (MESH:D000230), medullary, anaplastic thyroid, adenoid cystic and endometrial cancer (MESH:D065646), pancreatic adenocarcinoma (MESH:D010190), cervical cancer (MESH:D002583), small cell lung cancer (MESH:D055752), Fibrosis (MESH:D005355), melanoma (MESH:D008545), FI (MESH:C531841), prostate cancer (MESH:D011471), SCLC (MESH:D018288), injury to (MESH:D014947), inflammatory (MESH:D007249), solid (MESH:D018250), glioblastoma (MESH:D005909), renal carcinomas (MESH:D002292), MR (MESH:D002313), basal-like carcinoma (MESH:D002280), hepatocellular carcinoma (MESH:D006528), ovarian cancer (MESH:D010051), lymph node metastasis (MESH:D008207), TNBC metastasis (MESH:D064726), Breast cancer (MESH:D001943), ductal, high-grade carcinomas (MESH:D044584), Drug (MESH:D000081015), lymphomas (MESH:D008223), advanced (MESH:D020178), tumor suppressor (OMIM:601308), lobular carcinoma (MESH:D018275), toxicities (MESH:D064420), ID (MESH:D007154), bone marrow suppression (MESH:D001855), colon cancer (MESH:D015179), urothelial carcinoma (MESH:D014523), tumorigenic (MESH:D002471), lung metastasis (MESH:D009362), anemia (MESH:D000740)
- **Chemicals:** Cyclophosphamide (MESH:D003520), 5,10-methylenetetrahydrofolate (MESH:C013123), taselisib (MESH:C582924), Avastin (MESH:D000068258), vinorelbine (MESH:D000077235), BAY-876 (MESH:C000620175), STF-31 (MESH:C000599307), polydopamine (MESH:C568283), napabucasin (MESH:C000621033), Atezolizumab (MESH:C000594389), free fatty acids (MESH:D005230), testosterone (MESH:D013739), LBH589 (MESH:D000077767), TVB-2640 (MESH:C000717092), nucleotides (MESH:D009711), methotrexate (MESH:D008727), salinomycin (MESH:C010327), metformin (MESH:D008687), rucaparib (MESH:C531549), R428 (MESH:C548378), 5-fluorouracil (MESH:D005472), BKM120 (MESH:C571178), glucan (MESH:D005936), lonidamine (MESH:C016371), tricarboxylic acid (MESH:D014233), carbon (MESH:D002244), etomoxir (MESH:C054207), Ibrance (MESH:C500026), 2-DG (MESH:D003847), JS001 (MESH:C000656314), eribulin (MESH:C490954), paclitaxel (MESH:D017239), nitrogen (MESH:D009584), polyglutamate (MESH:D011099), SN-38 (MESH:D000077146), PDR001 (MESH:C000711728), PIP2 (MESH:D019269), lactate (MESH:D019344), 3-BrPA (MESH:C017092), oxygen (MESH:D010100), Veliparib (MESH:C521013), Trilaciclib (MESH:C000708352), Anthracycline (MESH:D018943), PF-05212384 (MESH:C549060), avelumab (MESH:C000609138), chitosan (MESH:D048271), T (MESH:D014316), polysiloxane (MESH:D012833), gold (MESH:D006046), Bicalutamide (MESH:C053541), ceralasertib (MESH:C000611951), platinum (MESH:D010984), pyruvate (MESH:D019289), capivasertib (MESH:C575618), metal (MESH:D008670), folate (MESH:D005492), ROS (MESH:D017382), CB-839 (MESH:C000593334), docetaxel (MESH:D000077143), BMN-673 (MESH:C586365)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** glutamine into glutamic acid
- **Cell lines:** HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), RIBBON-2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628)

## Full text

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## References

242 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938848/full.md

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Source: https://tomesphere.com/paper/PMC12938848