# Design and Synthesis of Caffeine-Based Derivatives with Antioxidant and Neuroprotective Activity: In Vitro Evaluation and SwissADME Profiling

**Authors:** Denitsa Stefanova, Alime Garip, Virginia Tzankova, Stefan Kostov, Emilio Mateev, Alexander Zlatkov, Yavor Mitkov

PMC · DOI: 10.3390/antiox15020217 · Antioxidants · 2026-02-06

## TL;DR

Researchers designed new caffeine derivatives that show strong antioxidant and neuroprotective effects in lab tests, potentially useful for treating neurodegenerative diseases.

## Contribution

The study introduces novel caffeine-based compounds with enhanced antioxidant and neuroprotective activity compared to caffeine and standard antioxidants.

## Key findings

- Several caffeine derivatives showed higher antioxidant activity than caffeine and Trolox at low concentrations.
- Compound AL-7 provided up to 85% protection against glutamate-induced excitotoxicity in human neuroblastoma cells.
- SwissADME analysis predicted good oral bioavailability but limited blood–brain barrier permeability for the derivatives.

## Abstract

Oxidative stress and excitotoxicity are key contributors to neuronal damage in various neurodegenerative diseases. Caffeine, a widely used neuroactive compound with moderate antioxidant properties, may benefit from structural modifications to enhance its neuroprotective potential. In this study, a series of novel caffeine derivatives was synthesized and evaluated for antioxidant and potential neuroprotective relevance using in vitro models of oxidative stress and glutamate-induced excitotoxicity in SH-SY5Y human neuroblastoma cells. Antioxidant capacity was assessed using ABTS•+ radical cation decolorization and DPPH radical scavenging assays. Most derivatives exhibited strong free radical scavenging activity, surpassing both caffeine and the reference antioxidant Trolox at low concentrations (5 µM). Notably, compounds AL-7, AL-8, AL-9, and AL-10 demonstrated particularly high activity. Cytotoxicity evaluation using the MTT assay revealed low toxicity for all compounds, with calculated IC50 values above 500 µM. Intracellular reactive oxygen species (ROS) levels measured by the DCFH-DA assay showed that several derivatives, especially AL-4, significantly reduced H2O2-induced oxidative stress. In neuroprotection assays, compounds AL-0, AL-1, and AL-4 markedly protected against hydrogen peroxide-induced damage, restoring cell viability up to 73%, while AL-7 achieved up to 85% protection against L-glutamate-induced excitotoxicity, outperforming caffeine. In silico SwissADME analysis indicated favorable oral bioavailability, with predicted gastrointestinal absorption and limited blood–brain barrier permeability. Overall, these findings highlight structurally modified caffeine derivatives as promising antioxidant and neuroprotective agents warranting further mechanistic and therapeutic investigation.

## Linked entities

- **Chemicals:** caffeine (PubChem CID 2519), Trolox (PubChem CID 40634), ABTS•+ (PubChem CID 35688), DCFH-DA (PubChem CID 104913), H2O2 (PubChem CID 784), L-glutamate (PubChem CID 33032)

## Full-text entities

- **Genes:** CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}, PAGE1 (PAGE family member 1) [NCBI Gene 8712] {aka AL5, CT16.3, GAGE-9, GAGEB1, PAGE-1}, EFNA5 (ephrin A5) [NCBI Gene 1946] {aka AF1, EFL5, EPLG7, GLC1M, LERK7, RAGS}, CYP4F3 (cytochrome P450 family 4 subfamily F member 3) [NCBI Gene 4051] {aka CPF3, CYP4F, CYPIVF3, LTB4H}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}, GSR (glutathione-disulfide reductase) [NCBI Gene 2936] {aka CNSHA10, GR, GSRD, HEL-75, HEL-S-122m}, PGP (phosphoglycolate phosphatase) [NCBI Gene 283871] {aka AUM, G3PP, PGPase}, CYP2C8 (cytochrome P450 family 2 subfamily C member 8) [NCBI Gene 1558] {aka CPC8, CYP2C8DM, CYPIIC8, MP-12/MP-20}, CAT (catalase) [NCBI Gene 847], CYP1A2 (cytochrome P450 family 1 subfamily A member 2) [NCBI Gene 1544] {aka CP12, CYPIA2, P3-450, P450(PA)}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, ABCB1 (ATP binding cassette subfamily B member 1) [NCBI Gene 5243] {aka ABC20, CD243, CLCS, ENPAT, GP170, MDR1}, CYP2C9 (cytochrome P450 family 2 subfamily C member 9) [NCBI Gene 1559] {aka CPC9, CYP2C, CYP2C10, CYPIIC9, P450-2C9, P450IIC9}, CYP3A4 (cytochrome P450 family 3 subfamily A member 4) [NCBI Gene 1576] {aka CP33, CP34, CYP3A, CYP3A3, CYPIIIA3, CYPIIIA4}
- **Diseases:** Neurotoxicity (MESH:D020258), Alzheimer's (MESH:D000544), HD (MESH:D006816), neuroinflammation (MESH:D000090862), CNS disorders (MESH:D002493), Neurodegenerative diseases (MESH:D019636), excitotoxic injury (MESH:D014947), mitochondrial dysfunction (MESH:D028361), Parkinson's disease (MESH:D010300), neuronal dysfunction (MESH:D009461), Neuroblastoma (MESH:D009447), cerebellar degeneration (MESH:D013132), MSA (MESH:D019578), SCA (MESH:D020754), Cytotoxicity (MESH:D064420), ALS (MESH:D000690), mitochondrial encephalopathies (MESH:C538525), FTD (MESH:D057180), motor impairment (MESH:D000068079), neuronal damage (MESH:D009410)
- **Chemicals:** CO (MESH:D002248), theophylline (MESH:D013806), N (MESH:D009584), C4 (MESH:C058899), TMS (MESH:C073196), ketone (MESH:D007659), hydrazine hydrate (MESH:C029424), 2,2-diphenyl-1-picrylhydrazyl (MESH:C004931), streptomycin (MESH:D013307), C (MESH:D002244), lipid peroxides (MESH:D008054), metal (MESH:D008670), Trolox (MESH:C010643), methanol (MESH:D000432), 3H (MESH:D014316), formazan (MESH:D005562), Br (MESH:D001966), O (MESH:D010100), paraxanthine (MESH:C021183), hydrochloric acid (MESH:D006851), Glutamate (MESH:D018698), ethanol (MESH:D000431), xanthine (MESH:D019820), 13C (MESH:C000615229), hydroxyl radicals (MESH:D017665), sodium hydroxide (MESH:D012972), water (MESH:D014867), Schiff base (MESH:D012545), F (MESH:D005461), 2',7'-dichlorofluorescein diacetate (MESH:C029569), C6 (MESH:C117224), DCF (MESH:C037631), 8-bromocaffeine (MESH:C017795), MTT (MESH:C070243), phenoxyl radicals (MESH:C042329), phenols (MESH:D010636), Cl (MESH:D002713), acetone (MESH:D000096), theobromine (MESH:D013805), potassium persulfate (MESH:C009007), H2O2 (MESH:D006861), C19H21FN6O3S (-), superoxide (MESH:D013481), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MESH:C022616), S (MESH:D013455), polyunsaturated fatty acids (MESH:D005231), N7 (MESH:C106144), n-butanol (MESH:D020001), Caffeine (MESH:D002110), penicillin (MESH:D010406), halogen (MESH:D006219), C8 (MESH:C037690), H (MESH:D006859), hydrazide (MESH:D006834), DMSO (MESH:D004121), Ar (MESH:D001128), ROS (MESH:D017382), calcium (MESH:D002118), L-glutamine (MESH:D005973), CO2 (MESH:D002245)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** cysteine/glutamate
- **Cell lines:** SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938810/full.md

## References

46 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938810/full.md

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Source: https://tomesphere.com/paper/PMC12938810