# Editing Candida: Origins and Advances of CRISPR Tools

**Authors:** Adina Schulze, Katharina Kainz, Maria A. Bauer, Didac Carmona-Gutierrez

PMC · DOI: 10.3390/biom16020245 · Biomolecules · 2026-02-04

## TL;DR

This paper reviews how CRISPR-Cas9 technology has improved the study of Candida species, enabling better understanding of their biology and pathogenicity.

## Contribution

The paper provides a comprehensive overview of CRISPR-based genetic tools developed for Candida species, highlighting recent advancements and applications.

## Key findings

- CRISPR-Cas9 has enabled precise genome editing in Candida species, overcoming prior genetic manipulation challenges.
- The technology has been adapted for multiple Candida species, including C. albicans, C. glabrata, and C. auris.
- CRISPR-based systems have facilitated functional genomic studies, revealing insights into virulence and antifungal resistance.

## Abstract

Pathogens causing candidiasis encompass a diverse group of ascomycetous yeasts that have become essential models for studying fungal adaptability, pathogenicity, and host–pathogen interactions. Although many candidiasis-promoting species exist as commensals within host microbiota, several have acquired virulence traits that enable opportunistic infections, positioning them as a leading cause of invasive fungal disease in humans. Deciphering the molecular and genetic determinants that underpin the biology of organisms responsible for candidiasis has long been a central objective in medical and molecular mycology. However, research progress has been constrained by intrinsic biological challenges, including noncanonical codon usage and the absence of a complete sexual cycle in diploid species, which have complicated traditional genetic manipulation. CRISPR-Cas9 genome editing has overcome many of these limitations, providing a precise, efficient, and versatile framework for targeted genomic modification. This system has facilitated functional genomic studies ranging from single-gene deletions to high-throughput mutagenesis, yielding new insights into the mechanisms governing virulence, antifungal resistance, and stress adaptation. Since its initial application in Candida albicans, CRISPR-Cas9 technology has been refined and adapted for other clinically and industrially relevant species, including Nakaseomyces glabratus (formerly referred to as Candida glabrata), Candida parapsilosis, and Candida auris. The present work provides an overview of the evolution of genetic approaches employed in research directed against candidiasis-associated species, with a particular focus on the development and optimization of CRISPR-based systems. It highlights how recent advancements have improved the genetic tractability of these pathogens and outlines emerging opportunities for both fundamental and applied studies in fungal biology.

## Linked entities

- **Diseases:** candidiasis (MONDO:0002026)
- **Species:** Candida albicans (taxon 5476), Nakaseomyces glabratus (taxon 5478)

## Full-text entities

- **Diseases:** infection (MESH:D007239), cytotoxicity (MESH:D064420), invasive candidiasis (MESH:D058365), nosocomial infections (MESH:D003428), C. metapsilosis (OMIM:211750), deaths (MESH:D003643), invasive fungal disease (MESH:D000072742), fungal (MESH:D009181), bloodstream infections (MESH:D018805), Candida lusitaniae (MESH:D002177), opportunistic infections (MESH:D009894), candidemia (MESH:D058387), injury to (MESH:D014947), inflammation (MESH:D007249), DSB (MESH:D019457)
- **Chemicals:** Amphotericin B (MESH:D000666), Manogepix (MESH:C570438), carbohydrate (MESH:D002241), hydrogen peroxide (MESH:D006861), Cas9 (-), sphingolipid (MESH:D013107), beta-glucan (MESH:D047071), xylitol (MESH:D014993), caspofungin (MESH:D000077336), polyenes (MESH:D011090), glycosylphosphatidylinositol (MESH:D017261), fluconazole (MESH:D015725), sterol (MESH:D013261), 5-fluorocytosine (MESH:D005437), azole (MESH:D001393), doxycycline (MESH:D004318), echinocandins (MESH:D054714), ethanol (MESH:D000431)
- **Species:** Homo sapiens (human, species) [taxon 9606], Lodderomyces parapsilosis (species) [taxon 5480], Candida dubliniensis (species) [taxon 42374], Meyerozyma guilliermondii (species) [taxon 4929], Bacteriophage sp. (species) [taxon 38018], Nakaseomyces glabratus (species) [taxon 5478], Mus musculus (house mouse, species) [taxon 10090], Clavispora lusitaniae (species) [taxon 36911], Hepatitis delta virus (no rank) [taxon 12475], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Candidozyma auris (species) [taxon 498019], Candida albicans (species) [taxon 5476], Escherichia coli (E. coli, species) [taxon 562], Candida tropicalis (species) [taxon 5482], Streptococcus pyogenes (species) [taxon 1314], Fungi (kingdom) [taxon 4751], Eremothecium gossypii (species) [taxon 33169]
- **Mutations:** S65L, valine-to-alanine, serine instead of leucine

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938656/full.md

## References

122 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938656/full.md

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Source: https://tomesphere.com/paper/PMC12938656