# Heart Failure in the Molecular Era: Redefining Our Understanding of Disease Mechanisms and Perspectives

**Authors:** Manuel Mallol-Simmonds, Alfredo Parra-Lucares, Ivan Canete, Cristian Avila, Josseline Pena-Silva, Sergio Bustamante

PMC · DOI: 10.3390/biomedicines14020486 · Biomedicines · 2026-02-23

## TL;DR

This paper reviews molecular advances in heart failure, highlighting new therapies and challenges in translating research into clinical practice.

## Contribution

The paper integrates recent molecular insights and therapeutic innovations to redefine heart failure management strategies.

## Key findings

- Stem cell therapies show regenerative potential but face poor cell retention and survival.
- CRISPR/Cas9 offers precision in genetic modification but has off-target effects.
- Omics technologies and microbiome research provide new biomarkers and therapeutic targets.

## Abstract

Heart failure (HF) is a global health challenge characterized by the heart’s inability to satisfy metabolic demands, driven by renin–angiotensin–aldosterone system (RAAS) overactivation, a neurohormonal imbalance, and emerging mechanisms like the gut–heart axis and mitochondrial dysfunction. Affecting over 6 million adults in the US alone, HF incurs a 5-year mortality rate of 50% and escalating costs projected to double by 2030. This review examines HF’s molecular paradigms, integrating established pathways with advances in omics, stem cell therapy, genetic modification, and personalized medicine. The RAAS blockade remains central, yet its efficacy is limited in HF with preserved ejection fraction (HFpEF). Stem cell therapies (mesenchymal and induced pluripotent stem cells) show regenerative potential but face poor retention (<10% survival at 30 days). CRISPR/Cas9 offers precision, though off-target effects persist. The gut microbiome, via trimethylamine N-oxide, exacerbates inflammation, while omics technologies promise biomarkers for tailored treatments. Challenges include translating these innovations into practice, particularly for HFpEF. Future directions involve novel HFpEF therapies, enhanced stem cell delivery, precise genetic tools, and microbiome interventions, supported with artificial intelligence. By 2030, these advances could shift HF management toward regeneration, contingent on overcoming translational barriers through global collaboration.

## Linked entities

- **Chemicals:** trimethylamine N-oxide (PubChem CID 1145)
- **Diseases:** heart failure (MONDO:0005252)

## Full-text entities

- **Genes:** AVP (arginine vasopressin) [NCBI Gene 551] {aka ADH, ARVP, AVP-NPII, AVRP, VP}, GRK2 (G protein-coupled receptor kinase 2) [NCBI Gene 156] {aka ADRBK1, BARK1, BETA-ARK1}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, SLC9A3 (solute carrier family 9 member A3) [NCBI Gene 6550] {aka DIAR8, NHE-3, NHE3}, VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412] {aka CD106, INCAM-100}, Myh7 (myosin, heavy polypeptide 7, cardiac muscle, beta) [NCBI Gene 140781] {aka B-MHC, MYH-beta/slow, MyHC-I, Myhc-b, Myhcb, beta-MHC}, AGT (angiotensinogen) [NCBI Gene 183] {aka ANHU, SERPINA8, hFLT1}, FOXO1 (forkhead box O1) [NCBI Gene 2308] {aka FKH1, FKHR, FOXO1A}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, PRKG1 (protein kinase cGMP-dependent 1) [NCBI Gene 5592] {aka AAT8, PKG, PKG1, PRKG1B, PRKGR1B, cGK}, TTN (titin) [NCBI Gene 7273] {aka CMD1G, CMH9, CMPD4, CMYO5, CMYP5, EOMFC}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, MME (membrane metalloendopeptidase) [NCBI Gene 4311] {aka CALLA, CD10, CMT2T, NEP, SCA43, SFE}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, NOS3 (nitric oxide synthase 3) [NCBI Gene 4846] {aka EC-NOS, ECNOS, MYMY8, NOSIII, cNOS, eNOS}, PKP2 (plakophilin 2) [NCBI Gene 5318] {aka ARVD9}, ATG5 (autophagy related 5) [NCBI Gene 9474] {aka APG5, APG5-LIKE, APG5L, ASP, SCAR25, hAPG5}, AP2B1 (adaptor related protein complex 2 subunit beta 1) [NCBI Gene 163] {aka ADTB2, AP105B, AP2-BETA, CLAPB1}, DES (desmin) [NCBI Gene 1674] {aka CDCD3, CSM1, CSM2, LGMD1D, LGMD1E, LGMD2R}, GATA4 (GATA binding protein 4) [NCBI Gene 2626] {aka ASD2, TACHD, TOF, VSD1}, SIRT3 (sirtuin 3) [NCBI Gene 23410] {aka SIR2L3}, Vegfa (vascular endothelial growth factor A) [NCBI Gene 22339] {aka L-VEGF, Vegf, Vpf}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, DNM1L (dynamin 1 like) [NCBI Gene 10059] {aka DLP1, DRP1, DVLP, DYMPLE, EMPF, EMPF1}, TBX5 (T-box transcription factor 5) [NCBI Gene 6910] {aka HOS}, GABARAPL1 (GABA type A receptor associated protein like 1) [NCBI Gene 23710] {aka APG8-LIKE, APG8L, ATG8, ATG8B, ATG8L, GEC1}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Nherf2 (NHERF family PDZ scaffold protein 2) [NCBI Gene 65962] {aka 0610011L07Rik, 1200011K07Rik, 2010007A20Rik, E3karp, NHERF-2, Octs2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, MYBPC3 (myosin binding protein C3) [NCBI Gene 4607] {aka CMD1MM, CMH4, FHC, LVNC10, MYBP-C, cMyBP-C}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, CD34 (CD34 molecule) [NCBI Gene 947], DSP (desmoplakin) [NCBI Gene 1832] {aka DCWHKTA, DP}, NRF1 (nuclear respiratory factor 1) [NCBI Gene 4899] {aka ALPHA-PAL}, REN (renin) [NCBI Gene 5972] {aka ADTKD4, HNFJ2, RTD}, Ccn2 (cellular communication network factor 2) [NCBI Gene 14219] {aka Ctgf, Fisp12, Hcs24, fisp-12}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, PLN (phospholamban) [NCBI Gene 5350] {aka CMD1P, CMH18, PLB}, Slc5a2 (solute carrier family 5 (sodium/glucose cotransporter), member 2) [NCBI Gene 246787] {aka Sglt2}, PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891] {aka LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A}, Slc9a1 (solute carrier family 9 (sodium/hydrogen exchanger), member 1) [NCBI Gene 20544] {aka Apnh, Mir5122, Nhe1, mir-5122, swe}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, TFAM (transcription factor A, mitochondrial) [NCBI Gene 7019] {aka MTDPS15, MTTF1, MTTFA, TCF6, TCF6L1, TCF6L2}, SIRT6 (sirtuin 6) [NCBI Gene 51548] {aka SIR2L6, hSIRT6}, ACE (angiotensin I converting enzyme) [NCBI Gene 1636] {aka ACE1, CD143, DCP, DCP1}
- **Diseases:** TMAO (MESH:C536108), atrial fibrillation (MESH:D001281), post (MESH:D000094025), ischemic heart disease (MESH:D017202), hypertrophy (MESH:D006984), Reduced cardiac output (MESH:D002303), MI (MESH:D009203), cardiovascular disease (MESH:D002318), DCM (MESH:D002311), infections (MESH:D007239), Renal sodium and water retention (MESH:D016055), diabetic cardiomyopathy (MESH:D058065), myocardial stiffness (MESH:C566112), hypertension (MESH:D006973), left ventricular hypertrophy (MESH:D017379), death (MESH:D003643), Clostridioides infections (MESH:D003015), anemia (MESH:D000740), HFpEF (MESH:D054144), HFrEF (MESH:D054143), metabolic restriction (MESH:D002313), necrosis (MESH:D009336), coronary artery disease (MESH:D003324), cardiac dysfunction (MESH:D006331), HCM (MESH:D002312), ventricular remodeling (MESH:D020257), HF (MESH:D006333), infarct (MESH:D007238), arrhythmogenic cardiomyopathy (MESH:D019571), type 2 diabetes (MESH:D003924), proinflammatory cytokines (MESH:D000080424), edema (MESH:D004487), chronic kidney disease (MESH:D051436), ventricular dysfunction (MESH:D018754), hyponatremia (MESH:D007010), pulmonary edema (MESH:D011654), ischemic (MESH:D002545), endothelial dysfunction (MESH:D014652), Dysbiosis (MESH:D064806), diabetes (MESH:D003920), malignancies (MESH:D009369), reduced (MESH:D001523), RCM (MESH:C566168), Mitochondrial dysfunction (MESH:D028361), myocardial remodeling (MESH:D064752), cardiac fibrosis (MESH:D005355), cardiometabolic diseases (MESH:D024821), trimethylaminuria (MESH:C536561), laminopathy (MESH:D000083083), injury to (MESH:D014947), inflammation (MESH:D007249), Iron Deficiency (MESH:D000090463), hypoxia (MESH:D000860), arrhythmic (OMIM:212500), Ebstein's anomaly (MESH:D004437), hypotensive (MESH:D007022), ischemia (MESH:D007511), glucosuria (MESH:D006030), genetic defects (MESH:D030342), Renal Function (MESH:D058186)
- **Chemicals:** fatty acids (MESH:D005227), L-Arginine (MESH:D001120), phosphatidylcholine (MESH:D010713), heme (MESH:D006418), amino acid (MESH:D000596), butyrate (MESH:D002087), natriuretic peptides (MESH:D045265), L-carnitine (MESH:D002331), sodium (MESH:D012964), betaine (MESH:D001622), rifaximin (MESH:D000078262), ARNIs (-), SCFA (MESH:D005232), ROS (MESH:D017382), Finerenone (MESH:C576501), calcium (MESH:D002118), NR (MESH:C018613), Metoprolol (MESH:D008790), NAD+ (MESH:D009243), lipopolysaccharide (MESH:D008070), lipid (MESH:D008055), Spironolactone (MESH:D013148), sacubitril (MESH:C000717211), HNO (MESH:C039900), ATP (MESH:D000255), ketone (MESH:D007659), fructooligosaccharides (MESH:C116580), Aldosterone (MESH:D000450), choline (MESH:D002794), carvedilol (MESH:D000077261), allopurinol (MESH:D000493), ferric carboxymaltose (MESH:C522335), oxygen (MESH:D010100), TMAO (MESH:C005855), beta-hydroxybutyrate (MESH:D020155), cGMP (MESH:D006152), elamipretide (MESH:C506540), TMA (MESH:C023336), cyclic AMP (MESH:D000242), 3,3-Dimethyl-1-butanol (MESH:C007469), nitric oxide (MESH:D009569), Ketone bodies (MESH:D007657), L-citrulline (MESH:D002956), Adenine (MESH:D000225), inulin (MESH:D007444), norepinephrine (MESH:D009638), branched-chain amino acid (MESH:D000597), empagliflozin (MESH:C570240), iron (MESH:D007501), BASE (MESH:D009711), metformin (MESH:D008687)
- **Species:** Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Bacteroides (genus) [taxon 816], gut metagenome (species) [taxon 749906], Shigella (genus) [taxon 620], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Lacticaseibacillus rhamnosus (species) [taxon 47715], Mus musculus (house mouse, species) [taxon 10090], Eubacterium (genus) [taxon 1730], Salmonella (genus) [taxon 590], Campylobacter (genus) [taxon 194], Faecalibacterium (genus) [taxon 216851], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Providencia rettgeri (species) [taxon 587]
- **Mutations:** R406W, p.Arg119Ter, c.842T>C, V55M, Pro209Leu, Ile451Met, V919G, R49H, F531C, R14del, Ala21Val, p.S358L, p.R403Q, c.6154C>T, c.4751_4752del, p.Glu125Gly, 185G>C, p.Y122H, G256E, Ala57Gly, c.6902C>T

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938655/full.md

## References

132 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938655/full.md

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Source: https://tomesphere.com/paper/PMC12938655