# Interpretable Machine Learning Identifies Key Inflammatory and Morphological Drivers of Intracranial Aneurysm Rupture Risk

**Authors:** Epameinondas Ntzanis, Nikolaos Papandrianos, Petros Zampakis, Vasilios Panagiotopoulos, Constantinos Koutsojannis, Christina Kalogeropoulou, Elpiniki I. Papageorgiou

PMC · DOI: 10.3390/bioengineering13020226 · Bioengineering · 2026-02-15

## TL;DR

This study uses interpretable machine learning to identify how inflammation and aneurysm shape affect the risk of intracranial aneurysm rupture.

## Contribution

The novel contribution is using interpretable ML to uncover nonlinear interactions between inflammation and morphology in predicting aneurysm rupture.

## Key findings

- A tuned Random Forest model achieved high test ROC-AUC (0.92) and average precision (0.97) in predicting rupture status.
- Inflammatory markers (CRP, C3, C4) and morphology (neck width, irregular shape) were key predictors of rupture risk.
- Interpretable ML revealed that higher inflammation with specific morphological features increases rupture risk.

## Abstract

Traditional statistical approaches identify group-level associations between biomarkers and rupture status in intracranial aneurysms (IAs) but often miss nonlinear interactions at the patient level. Methods: The authors retrospectively analyzed 35 saccular IAs in 35 patients (57.1% ruptured) from a single center (2021–2023). Demographics, detailed morphology (e.g., neck width, aspect ratio, VERTI, irregular shape), and multi-site inflammatory/immune markers (CRP; complement C3/C4; IgA/IgG/IgM) were included. After preprocessing (min–max scaling; one-hot encoding), five algorithms (DT, AdaBoost, GBM, XGBoost, RF) were evaluated with stratified five-fold CV and class balancing via random oversampling. The primary model (Random Forest) was tuned with Optuna and explained using global feature importance and LIME. The results showed that baseline RF achieved CV ROC-AUC 0.81 and test ROC-AUC 0.92 (test accuracy 0.857). The tuned RF (with oversampling and Optuna) yielded a mean CV accuracy of 0.85 ± 0.09 and CV ROC-AUC of 0.98 ± 0.07 while maintaining test ROC-AUC of 0.92. The average precision on the test PR curve was 0.97. The most influential predictors combined inflammatory markers (CRP, C3, C4) with morphology (neck width, irregular shape). LIME revealed consistent local patterns: low A.CRP/C.CRP and lower C3/C4 favored Not-Broken, whereas higher CRP/complement with smaller neck and irregular shape pushed toward Broken classifications. It can be concluded that an interpretable machine learning (ML) pipeline captured clinically plausible, nonlinear interactions between inflammation and aneurysm geometry. Integrating explainable ML with conventional statistics may enhance rupture risk stratification, enable patient-level rationale, and inform personalized management. These results could significantly contribute to the quality of treatment for patients with intracranial aneurysms.

## Linked entities

- **Proteins:** CRP (C-reactive protein), C3 (complement C3), C4A (complement C4A (Chido/Rodgers blood group)), CD79A (CD79a molecule), IGG (Immunoglobulin G level), CD40LG (CD40 ligand)

## Full-text entities

- **Genes:** CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, LOC102723407 (immunoglobulin heavy variable 4-38-2-like) [NCBI Gene 102723407] {aka IGHV4, IGHV4-30, IGHV4-38-2, IGHV4-39, IGHV4-b, IGVH4-39}, CCL14 (C-C motif chemokine ligand 14) [NCBI Gene 6358] {aka CC-1, CC-3, CKB1, HCC-1, HCC-1(1-74), HCC-1/HCC-3}, C3 (complement C3) [NCBI Gene 718] {aka AHUS5, ARMD9, ASP, C3a, C3b, CPAMD1}
- **Diseases:** AGE (OMIM:613784), depression (MESH:D003866), breast cancer (MESH:D001943), bronchiolitis (MESH:D001988), brain cancer (MESH:D001932), SEX (OMIM:400045), BLEB (MESH:D001768), hypertension (MESH:D006973), Malnourished (MESH:D044342), SAH (MESH:D013345), cerebrovascular disorder (MESH:D002561), LIME (MESH:D004195), aneurysm rupture (MESH:D017542), Primary Hyperparathyroidism (MESH:D049950), IAs (MESH:D002532), injury to (MESH:D014947), Inflammatory (MESH:D007249), TRUE (MESH:C565693), BROKEN (MESH:D050723), liver or kidney disorders (MESH:D051437), Alzheimer's disease (MESH:D000544), Aneurysm (MESH:D000783), diabetes (MESH:D003920), dissection (MESH:D000784), Rupture (MESH:D012421), cancer (MESH:D009369), neck aneurysms (MESH:D006258)
- **Chemicals:** LIME (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** A-C3

## Full text

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## Figures

17 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938577/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938577/full.md

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Source: https://tomesphere.com/paper/PMC12938577