# Predicting Conversion from Mild Cognitive Impairment to Alzheimer’s Disease Using a Vision Transformer and Hippocampal MRI Slices

**Authors:** René Seiger, Peter Fierlinger

PMC · DOI: 10.3390/bioengineering13020163 · Bioengineering · 2026-01-29

## TL;DR

This study explores using Vision Transformers to predict whether people with mild cognitive impairment will develop Alzheimer’s disease based on MRI scans of the hippocampus.

## Contribution

The novelty lies in applying a Vision Transformer, rather than traditional CNNs, to classify MCI converters and non-converters using hippocampal MRI slices.

## Key findings

- The ViT model achieved an average AUC-ROC of 0.74 for predicting conversion from MCI to AD.
- The model demonstrated an accuracy of 0.69 and an F1-score of 0.67 for progressive MCI classification.
- Results suggest ViTs can reasonably classify converters vs. non-converters, but further validation is needed.

## Abstract

Convolutional neural networks (CNNs) have been the standard for computer vision tasks including applications in Alzheimer’s disease (AD). Recently, Vision Transformers (ViTs) have been introduced, which have emerged as a strong alternative to CNNs. A common precursor stage of AD is a syndrome called mild cognitive impairment (MCI). However, not all individuals diagnosed with MCI progress to AD. In this exploratory investigation, we aimed to assess whether a ViT can reliably classify converters versus non-converters. A transfer learning approach was used for model training by applying a pretrained ViT model, fine-tuned on the ADNI dataset. The cohort comprised 575 individuals (299 stable MCIs; 276 progressive MCIs who converted within 36 months) from whom axial T1-weighted MRI slices covering the hippocampal region were used as model inputs. Results showed an average area under the receiver operating characteristic curve (AUC-ROC) on the test set of 0.74 ± 0.02 (mean ± SD), an accuracy of 0.69 ± 0.03, a sensitivity of 0.65 ± 0.07, a specificity of 0.72 ± 0.06, and an F1-score for the progressive MCI class of 0.67 ± 0.04. These findings demonstrate that a ViT approach achieves reasonable accuracy for classifying AD converters vs. non-converters, though its generalizability and clinical utility require further validation.

## Linked entities

- **Diseases:** Alzheimer’s disease (MONDO:0004975)

## Full-text entities

- **Genes:** VIT (vitrin) [NCBI Gene 5212] {aka VIT1}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}
- **Diseases:** Dementia (MESH:D003704), Cognitive Impairment (MESH:D003072), injury to (MESH:D014947), brain atrophy (MESH:C566985), AD (MESH:D000544), MCI (MESH:D060825)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12938448/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938448/full.md

## References

42 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938448/full.md

---
Source: https://tomesphere.com/paper/PMC12938448