# The Degradation Pathway of COP9 Signalosome–Cullin-RING Ubiquitin Ligase Complexes via Autophagy

**Authors:** Dawadschargal Dubiel, Roland Hartig, Wolfgang Dubiel

PMC · DOI: 10.3390/biom16020218 · Biomolecules · 2026-02-02

## TL;DR

This study reveals that specific COP9 signalosome-Cullin-RING complexes are degraded through autophagy, a process that can be inhibited by certain drugs.

## Contribution

The study identifies self-ubiquitylation of cullins as a signal for selective macroautophagy of CSN-CRL complexes.

## Key findings

- CSNCSN7A-CRL3 and CSNCSN7B-CRL4A complexes are degraded via autophagy in the absence of serum.
- Self-ubiquitylation of cullins acts as a signal for selective macroautophagy of CSN-CRL complexes.
- CSN-CRL complexes are expelled from the nucleus and localized in autophagosomes for degradation.

## Abstract

In Mammalia, the COP9 signalosome (CSN) is associated with cullin-RING ubiquitin ligases (CRLs). This study focuses on the variants CSNCSN7A and CSNCSN7B, which form complexes with CRL3 and CRL4A, respectively. Although some research has been conducted on the assembly of the complexes, little is known about their breakdown. Here, we show that entire CSNCSN7A-CRL3 and CSNCSN7B-CRL4A complexes are degraded via autophagy. CSN-CRL complexes are degraded in the absence of serum via bulk autophagy and in the presence of the specific inhibitor of CSN, CSN5i-3, via selective macroautophagy. Surprisingly, the self-ubiquitylation of cullins in the CRLs was identified as a specific signal for selective macroautophagy. The self-ubiquitylation of cullins takes place in the presence of CSN5i-3, and CSN-CRL complexes are expelled from the nucleus to be degraded in the cytosol. Selective macroautophagy can be blocked by chloroquine, a specific inhibitor of autophagy. Interestingly, the process can also be inhibited by MLN4924, a neddylation inhibitor. Confocal fluorescence microscopy illustrates the interaction of CSN subunits with ATG8, as well as with RAB7, both in HeLa and in LiSa-2 cells. Confocal fluorescence microscopy produces images that suggest the localization of CSN-CRL particles in autophagosomes. Our data place CSN-CRL in the category of large complexes that are degraded through autophagy.

## Linked entities

- **Genes:** COPS7A (COP9 signalosome subunit 7A) [NCBI Gene 50813], COPS7B (COP9 signalosome subunit 7B) [NCBI Gene 64708], IL31RA (interleukin 31 receptor A) [NCBI Gene 133396]
- **Proteins:** GABARAPL2 (GABA type A receptor associated protein like 2), RAB7A (RAB7A, member RAS oncogene family)
- **Chemicals:** chloroquine (PubChem CID 2719), MLN4924 (PubChem CID 16720766)
- **Species:** Mammalia (taxon 40674)

## Full-text entities

- **Genes:** CAND1 (cullin associated and neddylation dissociated 1) [NCBI Gene 55832] {aka TIP120, TIP120A}, IL27RA (interleukin 27 receptor subunit alpha) [NCBI Gene 9466] {aka CRL1, IL-27RA, IL27R, TCCR, WSX1, zcytor1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, COPS7A (COP9 signalosome subunit 7A) [NCBI Gene 50813] {aka CSN7, CSN7A, SGN7a}, IL31RA (interleukin 31 receptor A) [NCBI Gene 133396] {aka CRL, CRL3, GLM-R, GLMR, GPL, IL-31RA}, COPS7B (COP9 signalosome subunit 7B) [NCBI Gene 64708] {aka CSN7B, SGN7b}, RPN1 (ribophorin I) [NCBI Gene 6184] {aka OST1, RBPH1}, LMNB2 (lamin B2) [NCBI Gene 84823] {aka EPM9, LAMB2, LMN2, MCPH27}, COPS5 (COP9 signalosome subunit 5) [NCBI Gene 10987] {aka CSN5, JAB1, MOV-34, SGN5}, IGF2R (insulin like growth factor 2 receptor) [NCBI Gene 3482] {aka CD222, CI-M6PR, CIMPR, M6P-R, M6P/IGF2R, MPR 300}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, PADI1 (peptidyl arginine deiminase 1) [NCBI Gene 29943] {aka HPAD10, PAD1, PDI, PDI1}, NUCLEOLIN (nucleolin multifunctional protein) [NCBI Gene 4691] {aka C23, NCL, Nsr1}, COPS6 (COP9 signalosome subunit 6) [NCBI Gene 10980] {aka CSN6, MOV34-34KD}, CUL3 (cullin 3) [NCBI Gene 8452] {aka CUL-3, NEDAUS, PHA2E}, RAB7B (RAB7B, member RAS oncogene family) [NCBI Gene 338382] {aka RAB7}, DCTN6 (dynactin subunit 6) [NCBI Gene 10671] {aka WS-3, WS3, p27}, TOLLIP (toll interacting protein) [NCBI Gene 54472] {aka IL-1RAcPIP}, GABARAPL1 (GABA type A receptor associated protein like 1) [NCBI Gene 23710] {aka APG8-LIKE, APG8L, ATG8, ATG8B, ATG8L, GEC1}, COPS8 (COP9 signalosome subunit 8) [NCBI Gene 10920] {aka COP9, CSN8, SGN8}, LAMP2 (lysosome associated membrane protein 2) [NCBI Gene 3920] {aka CD107b, DND, LAMP-2, LAMPB, LGP-96, LGP110}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, CSN3 (casein kappa) [NCBI Gene 1448] {aka CNS10, CSN10, CSNK, KCA}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, CACUL1 (CDK2 associated cullin domain 1) [NCBI Gene 143384] {aka C10orf46, CAC1}, CSN1S1 (casein alpha s1) [NCBI Gene 1446] {aka CASA, CSN1}, CSN2 (casein beta) [NCBI Gene 1447] {aka CASB, PDC213}, IL17RB (interleukin 17 receptor B) [NCBI Gene 55540] {aka CRL4, EVI27, IL17BR, IL17RH1}, NEDD8 (NEDD8 ubiquitin like modifier) [NCBI Gene 4738] {aka NEDD-8}, COPS4 (COP9 signalosome subunit 4) [NCBI Gene 51138] {aka CSN4, SGN4}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, CUL4A (cullin 4A) [NCBI Gene 8451], PRSS27 (serine protease 27) [NCBI Gene 83886] {aka CAPH2, MPN}, PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4) [NCBI Gene 5710] {aka AF, AF-1, ASF, MCB1, Rpn10, S5A}
- **Diseases:** injury to (MESH:D014947)
- **Chemicals:** SDS (MESH:D012967), MLN4924 (MESH:C539933), CSN5i-3 (MESH:C000634102), PBS (MESH:D007854), CQ (MESH:D002738), DAPI (MESH:C007293), sodium azide (MESH:D019810), Sepharose (MESH:D012685), paraformaldehyde (MESH:C003043), EDTA (MESH:D004492), Lipofectamine 2000 (MESH:C086724), FITC (MESH:D016650), NP-40 (MESH:C010615), Triton X-100 (MESH:D017830), sodium deoxycholate (MESH:D003840), NaCl (MESH:D012965), CSN (-), glycerol (MESH:D005990), G418 (MESH:C010680)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** AGS — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0139), B8 — Mus musculus (Mouse), Mouse erythroid leukemia, Cancer cell line (CVCL_9R59), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), LiSa-2 — Homo sapiens (Human), Pleomorphic liposarcoma, Cancer cell line (CVCL_M821), NCI — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0078), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938401/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938401/full.md

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Source: https://tomesphere.com/paper/PMC12938401