# Cell-Based Immunization Combined with Single-Round Cell Panning Enables Discovery of PSMA-Targeting Nanobodies from Phage Display Libraries

**Authors:** Tong Yang, Joke Veldhoven-Zweistra, Maarten Ligtenberg, Sigrun Erkens, Mirella Vredenbregt-van den Berg, Rick Jansen, Patrick Chames, Eric M. J. Bindels, Khadijeh Ahmadi, Chris H. Bangma, Anton M. F. Kalsbeek, Janne Leivo, Nicolaas Lumen, Harmen J. G. van de Werken, Wytske M. van Weerden, Soudabeh Kavousipour, Raheleh Tooyserkani, Guido Jenster

PMC · DOI: 10.3390/biom16020307 · Biomolecules · 2026-02-14

## TL;DR

This study shows that using tumor cells and cell panning can successfully identify nanobodies that target PSMA, a cancer-related protein, for potential use in imaging and therapy.

## Contribution

The study demonstrates a novel non-targeted immunization and panning strategy to discover PSMA-targeting nanobodies.

## Key findings

- Nanobodies specific to PSMA were successfully isolated using non-targeted immunization and panning.
- Two distinct epitopes on PSMA were identified and confirmed through competition assays.
- The approach proved effective for discovering cancer-targeting nanobodies without prior antigen knowledge.

## Abstract

There is a strong need for nanobodies that target novel cancer-associated antigens to advance radioligand imaging and antibody-based therapeutics. In this study, we investigated whether non-targeted llama immunization using tumor cells, combined with non-targeted phage-display panning of human cell lines, could yield nanobodies specific to Prostate-Specific Membrane Antigen (PSMA). Nanobody selection using both classical three-round PSMA negative–positive panning and single-round panning of cell lines (positive or negative) for PSMA showed clear enrichment for PSMA binders in both strategies. Using shRNA knockdown, flow cytometry, cell-ELISA, immunohistochemistry and structural modeling and docking, we confirmed the PSMA-targeting of selected nanobodies. Two distinct epitopes were predicted to be bound by nanobodies PSMANb9 and A7 (JVZ-007), and this was corroborated by epitope competition assays. These findings support the feasibility of non-targeted immunization and panning strategies for isolating antigen-targeting cancer nanobodies.

## Linked entities

- **Proteins:** FOLH1 (folate hydrolase 1)

## Full-text entities

- **Genes:** FOLH1 (folate hydrolase 1) [NCBI Gene 2346] {aka FGCP, FOLH, GCP2, GCPII, NAALAD1, PSM}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, SLC39A6 (solute carrier family 39 member 6) [NCBI Gene 25800] {aka LIV-1, LIV1, ZIP6}, CD9 (CD9 molecule) [NCBI Gene 928] {aka BTCC-1, DRAP-27, MIC3, MRP-1, TSPAN-29, TSPAN29}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, STEAP1 (STEAP family member 1) [NCBI Gene 26872] {aka PRSS24, STEAP}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, PSCA (prostate stem cell antigen) [NCBI Gene 8000] {aka PRO232, lncPSCA}, SLC44A4 (solute carrier family 44 member 4) [NCBI Gene 80736] {aka C6orf29, CTL4, DFNA72, NG22, TPPT, hTPPT1}
- **Diseases:** PCa (MESH:D011471), melanoma (MESH:D008545), injury to (MESH:D014947), Cancer (MESH:D009369), Prostate (MESH:D011472), BlCa (MESH:D001749), viral infections (MESH:D014777), infection (MESH:D007239)
- **Chemicals:** water (MESH:D014867), imidazole (MESH:C029899), SDS (MESH:D012967), calcium phosphate (MESH:C020243), NaCl (MESH:D012965), Sodium deoxycholate (MESH:D003840), Triton X-100 (MESH:D017830), EDTA (MESH:D004492), agarose (MESH:D012685), PVDF (MESH:C024865), hydrogen (MESH:D006859), 3,3'-Diaminobenzidine (MESH:D015100), PBS (MESH:D007854), A7 (MESH:C020846), Alexa Fluor 647 (MESH:C569686), H6 (MESH:C003027), 3R (-)
- **Species:** Lama glama (llama, species) [taxon 9844], Escherichia coli (E. coli, species) [taxon 562], Xenotropic MuLV-related virus (no rank) [taxon 438045], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MDAPCa2b — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_4748), PSMANb6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), DU145 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0105), B16-WT — Megaptera novaeangliae (Humpback whale), Finite cell line (CVCL_4U66), PC346C — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_4883), LUPCa1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), VCaP — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_2235), 22Rv1 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_1045), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), JVZ-007 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_A4DH), B16-PSMA — Homo sapiens (Human), Finite cell line (CVCL_WB24), MSKPCa12D — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_AQ01), LUPCa1 and 2 — Rattus norvegicus (Rat), Adenocarcinoma of the rat prostate, Cancer cell line (CVCL_3569), LNCaP — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0395), A7 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_H340), PSMANb9 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RG56), B16 — Mus musculus (Mouse), Hybridoma (CVCL_U043), HB2151 — Homo sapiens (Human), Huntington's disease, Finite cell line (CVCL_H758), LUPCa2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628), PC339C — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_4881)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938363/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938363/full.md

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Source: https://tomesphere.com/paper/PMC12938363