# Structure, Function and Inhibition of Helicases Involved in Virus Infection

**Authors:** Gisoo Sarvari, David D. Boehr

PMC · DOI: 10.3390/biom16020273 · Biomolecules · 2026-02-09

## TL;DR

This paper reviews the structure, function, and inhibition of viral helicases, which are crucial for virus replication and potential drug targets.

## Contribution

The paper provides a virus-centered synthesis linking helicase enzymatic activities to diverse infection outcomes and antiviral strategies.

## Key findings

- Viral helicases play central roles in replication, gene expression, and virion assembly.
- Helicase architecture, substrate specificity, and cofactors control replication and immune evasion.
- Targeting helicases with antivirals shows promise but faces resistance and drug design challenges.

## Abstract

Viral helicases are conserved nucleic acid-dependent ATPases that drive genome replication, gene expression, and virion assembly, thereby playing a central role in viral replication and pathogenicity. Here, we discuss structural, biochemical, and virological data to compare helicase superfamilies, their conserved motifs, and translocation models that couple ATP hydrolysis to strand separation. We then analyze how viral helicases regulate replication fork progression, transcription and translation of viral RNAs, viral genome remodeling during replication, genome-packaging strategies, and evasion of innate immune signaling. Mechanistic examples from picornaviruses, flaviviruses, herpesviruses, and coronaviruses demonstrate how helicase architecture, substrate specificity, and cofactors control these activities. Finally, we discuss the opportunities and drawbacks of targeting viral helicases with antiviral drugs, recent screening and structure-guided discovery efforts, and emerging resistance mechanisms. Overall, this review provides a virus-centered synthesis of helicase structure, function, and inhibition that links conserved enzymatic activities to diverse infection outcomes and antiviral strategies across viral families.

## Full-text entities

- **Genes:** TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, HFM1 (helicase for meiosis 1) [NCBI Gene 164045] {aka MER3, POF9, SEC63D1, Si-11, Si-11-6, helicase}, SF1 (splicing factor 1) [NCBI Gene 7536] {aka BBP, D11S636, MBBP, ZCCHC25, ZFM1, ZNF162}, ITPA (inosine triphosphatase) [NCBI Gene 3704] {aka C20orf37, DEE35, HLC14-06-P, ITPase, My049, NTPase}, DDX3X (DEAD-box helicase 3 X-linked) [NCBI Gene 1654] {aka CAP-Rf, DBX, DDX14, DDX3, HLP2, MRX102}, TICAM1 (TIR domain containing adaptor molecule 1) [NCBI Gene 148022] {aka IIAE6, MyD88-3, PRVTIRB, TICAM-1, TRIF}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, SUGP1 (SURP and G-patch domain containing 1) [NCBI Gene 57794] {aka F23858, RBP, SF4}, MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}, CD36 (CD36 molecule (CD36 blood group)) [NCBI Gene 948] {aka BDPLT10, CHDS7, FAT, GP3B, GP4, GPIV}, helicase [NCBI Gene 1261048], Large T antigen [NCBI Gene 29031019], AAA1 (aortic aneurysm, familial abdominal 1) [NCBI Gene 100329167] {aka AAA}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, SRSF1 (serine and arginine rich splicing factor 1) [NCBI Gene 6426] {aka ASF, NEDFBA, SF2, SF2p33, SFRS1, SRp30a}, SAT1 (spermidine/spermine N1-acetyltransferase 1) [NCBI Gene 6303] {aka DC21, KFSD, KFSDX, SAT, SSAT, SSAT-1}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, PRKRA (protein activator of interferon induced protein kinase EIF2AK2) [NCBI Gene 8575] {aka DYT16, HSD14, PACT, RAX}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, RHO (rhodopsin) [NCBI Gene 6010] {aka CSNBAD1, OPN2, RP4}
- **Diseases:** respiratory disease (MESH:D012140), injury to (MESH:D014947), mucocutaneous disease (MESH:D004194), poliomyelitis (MESH:D011051), herpes encephalitis (MESH:D020803), neonatal herpes (MESH:C536395), SARS (MESH:D045169), herpes zoster (MESH:D006562), MERS (MESH:D018352), Virus Infection (MESH:D014777), HSV (MESH:D006561), cytotoxicity (MESH:D064420), Infection (MESH:D007239), COVID-19 (MESH:D000086382)
- **Chemicals:** posaconazole (MESH:C101425), nucleotide (MESH:D009711), myricetin (MESH:C040015), hydantoin (MESH:D006827), NF-023 (MESH:C105374), BILS 179 BS (MESH:C453220), dihydromyricetin (MESH:C472036), pirlindole (MESH:C009830), kaempferol (MESH:C006552), acyclovir (MESH:D000212), grazoprevir (MESH:C578009), ASP2151 (MESH:C568714), benzimidazole (MESH:C031000), IOWH-032 (MESH:C000720749), scutellarein (MESH:C458179), phosphate (MESH:D010710), Zinc (MESH:D015032), 2-aminothiazole (MESH:C004483), flavanone (MESH:C028610), acridine (MESH:D000166), plicamycin (MESH:D008926), ADP (MESH:D000244), benzothiazole (MESH:C005465), licoflavone C (MESH:C533963), Ranitidine bismuth citrate (MESH:C073340), quercetin (MESH:D011794), novobiocin (MESH:D009675), BAY 57-1293 (MESH:C453221), adamantane (MESH:D000218), triazole (MESH:D014230), fluoxetine (MESH:D005473), Evans Blue (MESH:D005070), quinoline (MESH:C037219), ATP (MESH:D000255), FPA-124 (MESH:C000716527), baicalein (MESH:C006680), flavonoid (MESH:D005419), tropolone (MESH:D014334), zuclopenthixol (MESH:D003006), dibucaine (MESH:D003992), GuHCl (MESH:D019791), Suramin (MESH:D013498), SSYA10-001 (MESH:C000601132), 6-bromo-1,2-naphthalenedione (-), wogonin (MESH:C085514), diosmetin (MESH:C039602), prunetin (MESH:C083295), 2-(alpha-hydroxybenzyl)-benzimidazole (MESH:C021033), silver sulfadiazine (MESH:D012837), chromone (MESH:D002867), bananins (MESH:C487581), MRL-1237 (MESH:C407906)
- **Species:** Gammacoronavirus (genus) [taxon 694013], Murine hepatitis virus (no rank) [taxon 11138], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Betapolyomavirus macacae (species) [taxon 1891767], Severe acute respiratory syndrome-related coronavirus (no rank) [taxon 694009], Human immunodeficiency virus 1 (no rank) [taxon 11676], Yellow fever virus (no rank) [taxon 11089], Hepatitis C Virus [taxon 11103], Middle East respiratory syndrome-related coronavirus (no rank) [taxon 1335626], Zika virus (no rank) [taxon 64320], Adeno-associated virus (species) [taxon 272636], SV40 [taxon 10633], Escherichia phage T7 (no rank) [taxon 10760], Mus musculus (house mouse, species) [taxon 10090], Dengue virus (no rank) [taxon 12637], Protoparvovirus (genus) [taxon 1506574], Human alphaherpesvirus 2 (no rank) [taxon 10310], West Nile virus (no rank) [taxon 11082], flavivirus [taxon 11051], Influenza A virus (no rank) [taxon 11320], Viruses (acellular root) [taxon 10239], Papillomaviridae (family) [taxon 151340], Picornaviridae (family) [taxon 12058], Theileria sp. 7 (species) [taxon 2874162], Enterovirus C (no rank) [taxon 138950], Homo sapiens (human, species) [taxon 9606], Tomato mosaic virus (no rank) [taxon 12253]
- **Mutations:** N179G, R392C, I227V, M187L, F190L

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938291/full.md

## References

103 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938291/full.md

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Source: https://tomesphere.com/paper/PMC12938291