# Receptor–Mitochondria Crosstalk in the Kynurenine Metabolic Pathway: Integrating Metabolomics and Clinical Mass Spectrometry

**Authors:** László Juhász, Zsolt Galla, Masaru Tanaka, László Vécsei

PMC · DOI: 10.3390/antiox15020261 · Antioxidants · 2026-02-19

## TL;DR

This paper explores how kynurenine metabolism interacts with mitochondria through receptors, offering a new framework for measuring these processes in clinical settings.

## Contribution

The study integrates receptor signaling, NAD+ synthesis, and LC-MS methods into a unified framework for mitochondrial kynurenine metabolism.

## Key findings

- Mitochondrial GPR35 signaling helps preserve ATP levels.
- AhR programs regulate oxidative defenses and mitophagy.
- QA-dependent NAD+ biogenesis links KYN flux to TCA cycle activity.

## Abstract

Mitochondria govern energy transfer, redox balance, and cell fate. Tryptophan catabolism generates kynurenines (KYNs) that can tune mitochondrial function, with growing evidence that G protein-coupled receptor 35 (GPR35), aryl hydrocarbon receptor (AhR), and N-methyl-D-aspartate receptors (NMDA receptors) link extracellular cues to adenosine 5 prime triphosphate (ATP) maintenance, calcium (Ca2+) handling, mitophagy, and inflammasome control. In parallel, quinolinic acid (QA)-driven de novo nicotinamide adenine dinucleotide (NAD+) synthesis connects KYN flux to tricarboxylic acid (TCA) cycle activity and sirtuin programs across tissues. Key gaps remain: receptor pharmacology is rarely integrated with NAD+ economics and respiration, and clinical workflows still lack single-run assays that quantify both kynurenine and TCA nodes. We therefore integrate receptor proximal signaling, QA-driven NAD+ supply, and unified liquid chromatography–mass spectrometry (LC-MS) measurement into one translational framework spanning kynurenic acid (KYNA), KYN, 3-hydroxykynurenine (3-HK), and QA, using mitochondrial endpoints as the common readout. We synthesize evidence for mitochondrial GPR35 signaling that preserves ATP, AhR programs that tune oxidative defenses and mitophagy, and NMDA receptor antagonism that limits excitotoxic stress. These mechanisms are linked to QA-dependent NAD+ biogenesis and alpha ketoglutarate control points, then aligned with chromatography and ionization choices suited to routine LC-MS workflows. This receptor to organelle framework couples KYN flux to respiratory control and provides a practical roadmap for standardized single-run LC-MS panels. It can strengthen target validation in ischemia, neurodegeneration, psychiatry, and oncology while improving biomarker qualification through harmonized analytics and decision-grade readouts.

## Linked entities

- **Genes:** GPR35 (G protein-coupled receptor 35) [NCBI Gene 2859], AHR (aryl hydrocarbon receptor) [NCBI Gene 196]
- **Chemicals:** quinolinic acid (PubChem CID 1066), NAD+ (PubChem CID 5892), 3-hydroxykynurenine (PubChem CID 89), kynurenic acid (PubChem CID 3845)

## Full-text entities

- **Genes:** Idh2 (isocitrate dehydrogenase 2 (NADP+), mitochondrial) [NCBI Gene 269951] {aka E430004F23, IDPm, Idh-2}, KMO (kynurenine 3-monooxygenase) [NCBI Gene 397148], Grin2a (glutamate ionotropic receptor NMDA type subunit 2A) [NCBI Gene 24409] {aka GluN2A, NMDAR2A, NR2A}, Bnip3l (BCL2/adenovirus E1B interacting protein 3-like) [NCBI Gene 12177] {aka D14Ertd719e, Nip3L, Nix}, Calm2 (calmodulin 2) [NCBI Gene 12314] {aka 1500001E21Rik, Cam2, CamC}, Nnt (nicotinamide nucleotide transhydrogenase) [NCBI Gene 18115] {aka 4930423F13Rik}, Ppargc1a (peroxisome proliferative activated receptor, gamma, coactivator 1 alpha) [NCBI Gene 19017] {aka A830037N07Rik, Gm11133, PGC-1, PPARGC-1-alpha, Pgc-1alpha, Pgc1}, Sucnr1 (succinate receptor 1) [NCBI Gene 84112] {aka Gpr91}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Me1 (malic enzyme 1, NADP(+)-dependent, cytosolic) [NCBI Gene 17436] {aka D9Ertd267e, Mdh-1, Mod-1, Mod1}, Il1 (interleukin 1 complex) [NCBI Gene 111343] {aka Il-1}, Bax (BCL2 associated X, apoptosis regulator) [NCBI Gene 24887], ND2 (NADH dehydrogenase subunit 2) [NCBI Gene 26194], Cyp1a2 (cytochrome P450, family 1, subfamily a, polypeptide 2) [NCBI Gene 13077] {aka CP12, CYPIA2, P450-3}, KYNU [NCBI Gene 100520985], Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)) [NCBI Gene 14810] {aka GluN1, GluRdelta1, GluRzeta1, M100174, NMD-R1, NMDAR1}, Idh1 (isocitrate dehydrogenase 1 (NADP+), soluble) [NCBI Gene 15926] {aka E030024J03Rik, Id-1, Idh-1, Idpc}, Acmsd (amino carboxymuconate semialdehyde decarboxylase) [NCBI Gene 266645], Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Sirt1 (sirtuin 1) [NCBI Gene 93759] {aka SIR2L1, Sir2, Sir2a, Sir2alpha}, Bax (BCL2-associated X protein) [NCBI Gene 12028], Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Aass (aminoadipate-semialdehyde synthase) [NCBI Gene 30956] {aka LKR, LKR/SDH, LOR, LOR/SDH, Lorsdh, SDH}, Nmnat1 (nicotinamide nucleotide adenylyltransferase 1) [NCBI Gene 66454] {aka 2610529L11Rik, 5730441G13Rik, D4Cole1e, nmnat}, GPX4 (glutathione peroxidase 4) [NCBI Gene 399537] {aka PHGPx}, Txn1 (thioredoxin 1) [NCBI Gene 22166] {aka ADF, Trx1, Txn}, Dnah8 (dynein, axonemal, heavy chain 8) [NCBI Gene 13417] {aka ATPase, Dnahc8, Hst6.7b, P1-Loop}, Atp5if1 (ATP synthase inhibitory factor subunit 1) [NCBI Gene 11983] {aka Atpi, Atpif1, IF(1), If1}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 6999] {aka HYPTRP, TDO, TO, TPH2, TRPO}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Src (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 83805], Vdac1 (voltage-dependent anion channel 1) [NCBI Gene 22333] {aka Vdac5, mVDAC1, mVDAC5}, ND3 (NADH dehydrogenase subunit 3) [NCBI Gene 2565696], Ctss (cathepsin S) [NCBI Gene 13040] {aka Cats}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, Sting1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 72512] {aka 2610307O08Rik, ERIS, MPYS, Mita, STING, STING-beta}, Il13 (interleukin 13) [NCBI Gene 16163] {aka Il-13}, RAB4A (RAB4A, member RAS oncogene family) [NCBI Gene 5867] {aka HRES-1, HRES-1/RAB4, HRES1, RAB4}, Chrna7 (cholinergic receptor, nicotinic, alpha polypeptide 7) [NCBI Gene 11441] {aka Acra7, alpha7, nAChR7, nAchR}, Pink1 (PTEN induced putative kinase 1) [NCBI Gene 68943] {aka 1190006F07Rik, BRPK, mFLJ00387}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 100301559] {aka TDO}, Sirt6 (sirtuin 6) [NCBI Gene 50721] {aka 2810449N18Rik, Sir2l6, mSIRT6}, Ptpn2 (protein tyrosine phosphatase, non-receptor type 2) [NCBI Gene 19255] {aka Ptpt, TC-PTP}, Cyp1a1 (cytochrome P450, family 1, subfamily a, polypeptide 1) [NCBI Gene 13076] {aka AHH, AHRR, CP11, CYPIA1, P450-1}, Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, Cxcl10 (C-X-C motif chemokine ligand 10) [NCBI Gene 245920] {aka IP-10, Scyb10}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Gpbar1 (G protein-coupled bile acid receptor 1) [NCBI Gene 227289] {aka BG37, GPCR, GPR131, M-BAR, TGR5}, Cyp1b1 (cytochrome P450, family 1, subfamily b, polypeptide 1) [NCBI Gene 13078] {aka CP1B, CYPIB1, P4501b1}, Bcl2l1 (BCL2-like 1) [NCBI Gene 12048] {aka Bcl(X)L, Bcl-XL, Bcl2l, BclX, bcl-x, bcl2-L-1}, Katnb1 (katanin p80 (WD40-containing) subunit B 1) [NCBI Gene 74187] {aka 2410003J24Rik, KAT}, Ahr (aryl-hydrocarbon receptor) [NCBI Gene 11622] {aka Ah, Ahh, Ahre, In, bHLHe76}, Nrf1 (nuclear respiratory factor 1) [NCBI Gene 18181] {aka D6Ertd415e}, Gnaq (guanine nucleotide binding protein, alpha q polypeptide) [NCBI Gene 14682] {aka 1110005L02Rik, 6230401I02Rik, Dsk1, Dsk10, Galphaq, Gq}, AHR (aryl hydrocarbon receptor) [NCBI Gene 396654], Capn1 (calpain 1) [NCBI Gene 12333] {aka Capa-1, Capa1, mu-calpin}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, Rho (rhodopsin) [NCBI Gene 212541] {aka Noerg1, Opn2, Ops, RP4}
- **Diseases:** stroke (MESH:D020521), acute kidney injury (MESH:D058186), mood disturbances (MESH:D019964), autoimmune (MESH:D001327), hypoxic (MESH:D002534), neurological diseases (MESH:D020271), obesity (MESH:D009765), organellar damage (MESH:D020263), lupus (MESH:D008180), hypoxia (MESH:D000860), neuronal dysfunction (MESH:D009461), major depression (MESH:D003865), cardiac ischemia (MESH:D007511), Metabolic disease (MESH:D008659), Alzheimer's and Parkinson's disease (MESH:D010300), Mitochondrial Injury (MESH:D028361), neurodegeneration (MESH:D019636), injury to (MESH:D014947), Inflammatory (MESH:D007249), glioma (MESH:D005910), cardiometabolic disease (MESH:D024821), neuroinflammation (MESH:D000090862), Psychiatric disorders (MESH:D001523), Alzheimer's (MESH:D000544), neurotoxic (MESH:D020258), Huntington's (MESH:D006816), cerebral ischemia (MESH:D002545), endothelial dysfunction (MESH:D014652), diabetes (MESH:D003920), Cancer (MESH:D009369), bipolar depression (MESH:D001714), amyloid (MESH:C000718787), liver ischemia (MESH:D017093), type 2 diabetes (MESH:D003924), heart failure (MESH:D006333), adiposity (MESH:D018205), breast and renal cancers (MESH:D001943), depression (MESH:D003866), glioblastoma astrocytoma (MESH:D005909), cognitive deficits (MESH:D003072), tissue injury (MESH:D017695), chronic (MESH:D002908), sepsis (MESH:D018805), infectious (MESH:D003141), diabetic kidney disease (MESH:D003928), migraine (MESH:D008881), reperfusion injury (MESH:D015427), infection (MESH:D007239), ischemic injury (MESH:D017202), psychosis (MESH:D011618)
- **Chemicals:** acetylcholine (MESH:D000109), XA (MESH:C028330), nicotinamide (MESH:D009536), methyllycaconitine (MESH:C054634), 3-HK (MESH:C005045), malate (MESH:C030298), hydroxyl radicals (MESH:D017665), glycine (MESH:D005998), QA (MESH:D017378), cAMP (MESH:D000242), picolinic acid (MESH:C030614), N-Methyl-D-Aspartate (MESH:D016202), ACN (MESH:C084683), KYN (MESH:D007737), acids (MESH:D000143), Formic acid (MESH:C030544), phosphoinositide (MESH:D010716), oxygen (MESH:D010100), pyruvate (MESH:D019289), succinate (MESH:D019802), methanol (MESH:D000432), PA (MESH:D011478), 5,7-dichloro-kynurenic acid (MESH:C066192), acetonitrile (MESH:C032159), carbon (MESH:D002244), TCA (MESH:D014233), lactate (MESH:D019344), KYNA (MESH:D007736), isocitrate (MESH:C034219), ammonium (MESH:D064751), LPS (MESH:D008070), ammonium acetate (MESH:C018824), lipid (MESH:D008055), cysteine (MESH:D003545), ATP (MESH:D000255), carbon dioxide (MESH:D002245), citrate (MESH:D019343), glutathione (MESH:D005978), glutamine (MESH:D005973), serotonin (MESH:D012701), ubiquinol (MESH:C003741), glucose (MESH:D005947), anthranilic acid (MESH:C031385), ROS (MESH:D017382), FA (MESH:D005492), calcium (MESH:D002118), 7-CKA (MESH:C057013), UMPS (MESH:D014542), NAD(H) (MESH:D009243), TRP (MESH:D014364), PNU 282987 (MESH:C498513), diazoxide (MESH:D003981), JC-1 (MESH:C068624), alpha ketoglutarate (MESH:D007656), proton (MESH:D011522), potassium (MESH:D011188), sodium (MESH:D012964), icariside I (MESH:C526898), H2O2 (MESH:D006861), L-2-hydroxyglutarate (-)
- **Species:** C. elegans [taxon 328850], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Mus musculus (house mouse, species) [taxon 10090], Danio rerio (leopard danio, species) [taxon 7955], Lymnaea (genus) [taxon 6522], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** C62-A
- **Cell lines:** H9c2 — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_0286), AML12 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0140), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), IPEC-J2 — Sus scrofa (Pig), Spontaneously immortalized cell line (CVCL_2246)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938270/full.md

## References

562 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938270/full.md

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Source: https://tomesphere.com/paper/PMC12938270