# RPS6KA1 Remodels Fatty Acid Metabolism and Suppresses Malignant Progression in Colorectal Cancer

**Authors:** Qixin Liu, Ziheng Peng

PMC · DOI: 10.3390/biomedicines14020374 · Biomedicines · 2026-02-05

## TL;DR

This study identifies RPS6KA1 as a key gene that suppresses colorectal cancer by regulating fatty acid metabolism and improving immune response.

## Contribution

The study reveals RPS6KA1 as a novel tumor-suppressive gene linked to fatty acid metabolism in colorectal cancer.

## Key findings

- RPS6KA1 is significantly downregulated in colorectal cancer and associated with poor prognosis.
- RPS6KA1 modulates fatty acid metabolism and inhibits cancer progression in cellular and animal models.
- RPS6KA1 enhances antitumor immune functions of CD8+T and follicular helper T cells.

## Abstract

Background: Colorectal cancer (CRC), with high incidence but low rates of early diagnosis, poses significant challenges to public health worldwide. Lipid metabolic reprogramming has been closely associated with CRC occurrence and development. This study aimed to identify key fatty acid metabolism-related molecules involved in the development of CRC and to explore potential prognostic biomarkers and therapeutic targets. Methods: Based on The Cancer Genome Atlas (TCGA) data from colon adenocarcinoma (COAD) patients, we applied weighted gene co-expression network analysis (WGCNA), Cox regression, and least absolute shrinkage and selection operator (LASSO) to identify fatty acid metabolism-related signature genes in CRC. Expression validation and prognostic analysis were conducted. Summary-data-based Mendelian randomization (SMR) was used to infer causal relationships between target genes and CRC. Single-cell transcriptomics and immune infiltration analysis elucidated underlying pathogenic mechanisms. Cellular and animal experiments validated tumor-suppressive effects and lipid metabolic regulatory mechanisms. Results: RPS6KA1 and CHGA were identified as fatty acid metabolism-related signature genes in COAD. Only RPS6KA1 was significantly downregulated in COAD and negatively correlated with poor prognosis (p = 0.0069). SMR confirmed its tumor-suppressive role, potentially associated with enhanced antitumor functions of CD8+T cells and follicular helper T cells. In vitro and in vivo experiments demonstrated that RPS6KA1 inhibits malignant progression of colon cancer and modulates fatty acid metabolism. Conclusions: Integrated multi-dimensional bioinformatic and experimental analyses reveal that RPS6KA1 remodels fatty acid metabolism and suppresses malignant progression, indicating its value as a prognostic biomarker in CRC and providing new insights for therapeutic strategies.

## Linked entities

- **Genes:** RPS6KA1 (ribosomal protein S6 kinase A1) [NCBI Gene 6195], CHGA (chromogranin A) [NCBI Gene 1113]
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, SLC44A4 (solute carrier family 44 member 4) [NCBI Gene 80736] {aka C6orf29, CTL4, DFNA72, NG22, TPPT, hTPPT1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, E2F1 (E2F transcription factor 1) [NCBI Gene 1869] {aka E2F-1, RBAP1, RBBP3, RBP3}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, STK11 (serine/threonine kinase 11) [NCBI Gene 6794] {aka LKB1, PJS, hLKB1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Rps6ka1 (ribosomal protein S6 kinase A1) [NCBI Gene 20111] {aka Mapkapk-1a, Rsk, Rsk-1, Rsk1, S6K-alpha-1, p90-Rsk1}, LYPD4 (LY6/PLAUR domain containing 4) [NCBI Gene 147719] {aka SMR}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, CD79A [NCBI Gene 101083127], TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CD68 [NCBI Gene 101099002], RPS6KA1 [NCBI Gene 101086492], CHGA (chromogranin A) [NCBI Gene 1113] {aka CGA, PHE5, PHES}, CPT2 (carnitine palmitoyltransferase 2) [NCBI Gene 1376] {aka CPT1, CPTASE, IIAE4}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, RPS6KA1 (ribosomal protein S6 kinase A1) [NCBI Gene 6195] {aka HU-1, MAPKAPK1, MAPKAPK1A, RSK, RSK1, p90Rsk}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, EPCAM [NCBI Gene 101081794], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, TRIM28 (tripartite motif containing 28) [NCBI Gene 10155] {aka KAP1, PPP1R157, RNF96, TF1B, TIF1B, TIF1beta}
- **Diseases:** Cancer (MESH:D009369), lung cancer (MESH:D008175), metastasis (MESH:D009362), melanoma (MESH:D008545), prostate cancer (MESH:D011471), inflammation (MESH:D007249), injury to (MESH:D014947), CRC (MESH:D015179), COAD (MESH:D003110), TICs (MESH:D020323), lung adenocarcinoma (MESH:D000077192), Obesity (MESH:D009765), tumorigenesis (MESH:D063646), Peutz-Jeghers syndrome (MESH:D010580)
- **Chemicals:** Hoechst 33342 (MESH:C017807), xylene (MESH:D014992), FA (MESH:D005227), streptomycin (MESH:D013307), H2O2 (MESH:D006861), Amplex Red Free Fatty Acid (-), hematoxylin (MESH:D006416), penicillin (MESH:D010406), puromycin (MESH:D011691), BODIPY 493/503 (MESH:C527198), PBS (MESH:D007854), BODIPY (MESH:C095489), formaldehyde (MESH:D005557), CO2 (MESH:D002245), ATP (MESH:D000255), Oil Red O (MESH:C011049), Lipid (MESH:D008055), FFA (MESH:D005230)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** serine/threonine, C2053S, S2015S
- **Cell lines:** 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), SW480 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0546), Caco2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025), c — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_9103), SW620 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0547), A549 lung cancer — Homo sapiens (Human), Lung squamous cell carcinoma, Cancer cell line (CVCL_3008), Lovo — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0399), CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873), HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), NCM460 — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0460)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938246/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938246/full.md

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Source: https://tomesphere.com/paper/PMC12938246