# Proteasome Inhibition Amplifies Endoplasmic Reticulum (ER) Stress Responses: Comparative Proteomics of Chinese Hamster Ovary Cell Lines

**Authors:** Christiana-Kondylo Sideri, David Ryan, Michael Henry, Esen Efeoglu, Paula Meleady

PMC · DOI: 10.3390/biom16020277 · Biomolecules · 2026-02-10

## TL;DR

This study explores how proteasome inhibition affects ER stress responses in different Chinese hamster ovary cell lines used for drug production.

## Contribution

The study reveals cell line-specific proteomic responses to proteasome and glycosylation inhibition, offering new insights into ER stress and protein quality control.

## Key findings

- Proteasome inhibition with MG132 intensified ER stress and altered ERAD in CHO cells.
- Combined treatment with tunicamycin and MG132 caused cell line-specific proteomic changes.
- CHO-K1 showed broad proteome shifts, while NISTCHO and CHO DP-12 upregulated specific stress-related proteins.

## Abstract

Chinese hamster ovary (CHO) cells are widely utilised in the biopharmaceutical industry to produce therapeutic proteins. Understanding the mechanisms of endoplasmic reticulum (ER) stress and its interplay with protein degradation pathways remains pivotal for improving production efficiency and product quality. In this study, we investigated the proteomic responses of CHO-K1 (non-producer), CHO DP-12 (IgG-producer), and NISTCHO (IgG-producer) cell lines under ER stress induced by a combination of the proteasome inhibitor MG132 and the glycosylation inhibitor tunicamycin. Viability, cell growth, and IgG titre were measured after 24 h, 48 h, and 72 h of treatment and the 48 h timepoint was used for the comparative analysis of the proteomic data across the three cell lines. Proteasome inhibition with MG132 intensified ER stress and altered ER-associated protein degradation (ERAD). Combined tunicamycin + MG132 treatment was associated with cell line-specific proteomic changes: NISTCHO upregulated ER translocation and glycoprotein quality control proteins (SSR4, SEC24C, UGGT1), CHO DP-12 activated redox/disulfide regulators (DNAJC10, CAPN1), while CHO-K1 showed broad proteome shifts, suggesting differences in baseline stress handling. These findings provide mechanistic insights into ER stress and protein quality control in CHO cells, offering a foundation for strategies to enhance cell line robustness and optimise biopharmaceutical production.

## Linked entities

- **Genes:** SSR4 (signal sequence receptor subunit 4) [NCBI Gene 6748], SEC24C (SEC24 homolog C, COPII component) [NCBI Gene 9632], UGGT1 (UDP-glucose glycoprotein glucosyltransferase 1) [NCBI Gene 56886], DNAJC10 (DnaJ heat shock protein family (Hsp40) member C10) [NCBI Gene 54431], CAPN1 (calpain 1) [NCBI Gene 823]
- **Chemicals:** MG132 (PubChem CID 462382)

## Full-text entities

- **Genes:** DNAJC10 [NCBI Gene 100689230], eIF2alpha [NCBI Gene 100767762], ERP29 [NCBI Gene 100762501], CUL1 [NCBI Gene 100757763], HSPA1A [NCBI Gene 100760510], CALR [NCBI Gene 100689096], LMAN1 [NCBI Gene 100754529], PSMB2 [NCBI Gene 100767174], SEC24C [NCBI Gene 100757844], beta-actin [NCBI Gene 100689477], HSPA8 [NCBI Gene 100689472], CANX [NCBI Gene 100689345], PSMB3 [NCBI Gene 100756232], UGGT1 [NCBI Gene 100773968], PSMA4 [NCBI Gene 100756711], CKAP4 [NCBI Gene 100766532], DNAJB1 [NCBI Gene 100753924], PSMC3 [NCBI Gene 100689203], LOC100760218 [NCBI Gene 100760218], PDIA6 [NCBI Gene 100766687], EIF2S1 [NCBI Gene 100761915], DNAJA1 [NCBI Gene 100689381], UBE4B [NCBI Gene 100771525], SKP1 [NCBI Gene 100757677], XBP1 [NCBI Gene 100689062], HYOU1 [NCBI Gene 100689308], NRF1 [NCBI Gene 100755053], HSP90AA1 [NCBI Gene 100689397], PDIA3 [NCBI Gene 100689343], DNAJB11 [NCBI Gene 100765455], RPN1 [NCBI Gene 100762811], UBE2D4 [NCBI Gene 100768634], PSMA7 [NCBI Gene 100769350], SSR4 [NCBI Gene 100751465], PDIA4 [NCBI Gene 100753458], ATXN3 [NCBI Gene 100754332], SEC31A [NCBI Gene 100762780], Ubiquitin [NCBI Gene 107977752], 26S proteasome non-ATPase regulatory subunit 6 [NCBI Gene 100751274], 26S proteasome non-ATPase regulatory subunit 2 [NCBI Gene 100750425], ATF6 [NCBI Gene 100772173], P4HB [NCBI Gene 100689433], GRP78 [NCBI Gene 100689305], HSP90B1 [NCBI Gene 100773331], GANAB [NCBI Gene 100752162], Trypsin [NCBI Gene 100769881], PSME3 [NCBI Gene 100762340], CAPN1 [NCBI Gene 100758636]
- **Diseases:** injury to (MESH:D014947), ERAD (MESH:D055959), cytotoxicity (MESH:D064420)
- **Chemicals:** CHAPS (MESH:C028213), MG132 (MESH:C072553), Peptide (MESH:D010455), Tunicamycin (MESH:D014415), MTX (MESH:D008727), water (MESH:D014867), SDS (MESH:D012967), Laemmli buffer (MESH:C088816), Thiourea (MESH:D013890), TPP (MESH:C016136), formic acid (MESH:C030544), trypan blue (MESH:D014343), methionine (MESH:D008715), polyacrylamide (MESH:C016679), Bis-Tris (MESH:C026272), Carbon (MESH:D002244), ACN (MESH:C032159), N (MESH:D009584), cysteine (MESH:D003545), L-glutamine (MESH:D005973), CO2 (MESH:D002245), Citrate (MESH:D019343), PBS (MESH:D007854), mAbs (MESH:D000911), disulfide (MESH:D004220), CHO DP-12 (-), TFA (MESH:D014269), TCA (MESH:D014238), amino acids (MESH:D000596), Urea (MESH:D014508)
- **Species:** Mycoplasma (genus) [taxon 2093], Cricetulus griseus (Chinese hamster, species) [taxon 10029], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** CHODP12 — Mus musculus (Mouse), Hybridoma (CVCL_J992), CHO DP-12 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213), Chinese hamster — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0212), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), CHOK1 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0214)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938224/full.md

## References

76 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938224/full.md

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Source: https://tomesphere.com/paper/PMC12938224