# Elucidating Genetic Drivers of Chronic Inflammation in Obesity

**Authors:** Leyla O. Rashidova, Danila D. Shashnin, Pavel S. Zubeev, Elena P. Abalikhina, Natalia G. Podprugina, Valeriy A. Kozlov, Sergey V. Stasenko, Tatiana A. Mishchenko, Maria V. Vedunova

PMC · DOI: 10.3390/biomedicines14020447 · Biomedicines · 2026-02-17

## TL;DR

This study explores how genetic variations influence inflammation in obesity, identifying specific genes and biomarkers linked to different inflammatory profiles.

## Contribution

The study identifies novel genetic polymorphisms and inflammatory biomarkers associated with distinct systemic inflammation patterns in obesity.

## Key findings

- COL1A1 rs1107946 and MMP9 rs17576 polymorphisms are linked to a favorable inflammatory profile with decreased IL-6 and increased IL-10.
- AGTR1 rs5186 and MTHFR rs1801131 variants are associated with pro-inflammatory shifts marked by elevated TNF-α and MIP-1β.
- Cluster analysis reveals distinct inflammatory subphenotypes, with IL-8, IL-15, and albumin as candidate biomarkers predictive of BMI.

## Abstract

Background/Objectives: Obesity is characterized by chronic low-grade inflammation, which plays a central role in the development of its metabolic complications. The genetic factors influencing this inflammatory phenotype remain incompletely understood. This study aimed to analyze the associations of functional polymorphisms in genes involved in extracellular matrix remodeling (MMP2, MMP9, MMP12, COL1A1), metabolism (MTHFR, CYP3A5), and vascular regulation (NOS3, AGTR1) with plasma cytokine profiles and to identify inflammatory subphenotypes in patients with obesity. Methods: The study included 127 individuals, comprising 73 patients with excess body weight (body mass index, BMI ≥ 25 kg/m2) and 54 individuals with normal weight (BMI 18.5–24.9 kg/m2). Genotyping of selected polymorphisms was performed using real-time PCR. Plasma concentrations of 47 cytokines and chemokines were measured by multiplex immunoassay. Results: Nominally significant associations between genetic variants and cytokine levels were identified. Polymorphisms COL1A1 rs1107946 (CA genotype) and MMP9 rs17576 (AG genotype) were associated with a favorable inflammatory profile (decreased IL-6 and increased IL-10, respectively). In contrast, the AGTR1 rs5186 (AC genotipe) variant was associated with elevated TNF-α, IP-10/CXCL10, while the MTHFR rs1801131 (AC genotipe) variant was linked to increased MIP-1β/CCL4, both reflecting a pro-inflammatory shift. Complex, pleiotropic associations were observed for MMP2 rs243865 (elevated IL-7 and Fractalkine/CX3CL1) and NOS3 rs1799983 (elevated MCP-1/CCL2 and Eotaxin/CCL11). Cluster analysis revealed distinct patient subpopulations with differing inflammatory signatures. In one well-defined subgroup, an exploratory model (test R2 = 0.537) identified IL-8, IL-15, and albumin as candidate biomarkers predictive of BMI. Conclusions: The study identifies candidate genetic polymorphisms and inflammatory biomarkers associated with distinct patterns of systemic inflammation in obesity. These hypothesis-generating findings underscore the phenotypic heterogeneity of obesity and provide a basis for further research into the stratification of patients by the risk of developing metabolic complications.

## Linked entities

- **Genes:** MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313], MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318], MMP12 (matrix metallopeptidase 12) [NCBI Gene 4321], COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277], MTHFR (methylenetetrahydrofolate reductase) [NCBI Gene 4524], CYP3A5 (cytochrome P450 family 3 subfamily A member 5) [NCBI Gene 1577], NOS3 (nitric oxide synthase 3) [NCBI Gene 4846], AGTR1 (angiotensin II receptor type 1) [NCBI Gene 185]
- **Diseases:** obesity (MONDO:0011122)

## Full-text entities

- **Genes:** PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, RETN (resistin) [NCBI Gene 56729] {aka ADSF, FIZZ3, RENT, RETN1, RSTN, XCP1}, CSF3 (colony stimulating factor 3) [NCBI Gene 1440] {aka C17orf33, CSF3OS, GCSF}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CEBPA (CCAAT enhancer binding protein alpha) [NCBI Gene 1050] {aka C/EBP-alpha, CEBP}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, CCL22 (C-C motif chemokine ligand 22) [NCBI Gene 6367] {aka A-152E5.1, ABCD-1, DC/B-CK, MDC, SCYA22, STCP-1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, IL25 (interleukin 25) [NCBI Gene 64806] {aka IL17E}, ITLN1 (intelectin 1) [NCBI Gene 55600] {aka HL-1, HL1, INTL, ITLN, LFR, hIntL}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, Mmp2 (matrix metallopeptidase 2) [NCBI Gene 17390] {aka Clg4a, GelA, MMP-2}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL27 (interleukin 27) [NCBI Gene 246778] {aka IL-27, IL-27A, IL27A, IL27p28, IL30, p28}, IL15 (interleukin 15) [NCBI Gene 3600] {aka IL-15}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, MTHFR (methylenetetrahydrofolate reductase) [NCBI Gene 4524], TGFA (transforming growth factor alpha) [NCBI Gene 7039] {aka TFGA}, CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283] {aka CMK, Humig, MIG, SCYB9, crg-10}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, REN (renin) [NCBI Gene 5972] {aka ADTKD4, HNFJ2, RTD}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, CCL11 (C-C motif chemokine ligand 11) [NCBI Gene 6356] {aka SCYA11}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, NAMPT (nicotinamide phosphoribosyltransferase) [NCBI Gene 10135] {aka 1110035O14Rik, PBEF, PBEF1, VF, VISFATIN}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, IL3 (interleukin 3) [NCBI Gene 3562] {aka IL-3, MCGF, MULTI-CSF}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CYP3A5 (cytochrome P450 family 3 subfamily A member 5) [NCBI Gene 1577] {aka CP35, CYPIIIA5, P450PCN3, PCN3}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, SP1 (Sp1 transcription factor) [NCBI Gene 6667], IL1RN (interleukin 1 receptor antagonist) [NCBI Gene 3557] {aka CRMO2, DIRA, ICIL-1RA, IL-1RN, IL-1ra, IL-1ra3}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, CX3CL1 (C-X3-C motif chemokine ligand 1) [NCBI Gene 6376] {aka ABCD-3, C3Xkine, CXC3, CXC3C, NTN, NTT}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, AGTR1 (angiotensin II receptor type 1) [NCBI Gene 185] {aka AG2S, AGTR1B, AT1, AT1AR, AT1B, AT1BR}, AGT (angiotensinogen) [NCBI Gene 183] {aka ANHU, SERPINA8, hFLT1}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, HPX (hemopexin) [NCBI Gene 3263] {aka HX}, IL17F (interleukin 17F) [NCBI Gene 112744] {aka CANDF6, IL-17F, ML-1, ML1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MMP12 (matrix metallopeptidase 12) [NCBI Gene 4321] {aka HME, ME, MME, MMP-12}, CFD (complement factor D) [NCBI Gene 1675] {aka ADIPSIN, ADN, DF, PFD}
- **Diseases:** fibrosis (MESH:D005355), metabolic syndrome (MESH:D024821), injury to (MESH:D014947), Inflammation (MESH:D007249), respiratory diseases (MESH:D012140), endothelial dysfunction (MESH:D014652), ischemic (MESH:D002545), diabetes (MESH:D003920), cancer (MESH:D009369), Obesity (MESH:D009765), steatohepatitis (MESH:D005234), weight gain (MESH:D015430), overweight (MESH:D050177), endothelial nitric oxide synthase deficiency (MESH:D020159), neurological disorders (MESH:D009461), ectopic fat (MESH:D004620), metabolic (MESH:D008659), reproductive dysfunction (MESH:D060737), hypoxia (MESH:D000860), metabolic complications (MESH:D020739), hypertension (MESH:D006973), deaths (MESH:D003643), cardiovascular diseases (MESH:D002318), digestive system disorders (MESH:D004066), insulin resistance (MESH:D007333), inflammatory kidney disease (MESH:D007674), adiposity (MESH:D018205), type 2 diabetes (MESH:D003924), hyperhomocysteinemia (MESH:D020138), oncological diseases (MESH:D000072716), abdominal obesity (MESH:D056128), chronic (MESH:D002908), communicable diseases (MESH:D003141)
- **Chemicals:** oxygen (MESH:D010100), triglycerides (MESH:D014280), Free fatty acids (MESH:D005230), NO (MESH:D009569), K3-EDTA (-), homocysteine (MESH:D006710), lipid (MESH:D008055), alcohol (MESH:D000438), folate (MESH:D005492), CA (MESH:D002118), creatinine (MESH:D003404), glucose (MESH:D005947)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Asn357Ser, rs1801133, rs652483, rs243865, rs1801131, Arg279Gln, rs1801394, rs1801282, rs1107946, A1166C, A > G in intron 3, rs1799983
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12938195/full.md

## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938195/full.md

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Source: https://tomesphere.com/paper/PMC12938195