# Nasopharyngeal Carcinoma at the Virology Precision Oncology Nexus: Decoding Molecular Alterations for Early Intervention and Therapeutic Innovation

**Authors:** Na Liu, Bin Meng, Yueshuo Li, Min Tang, Ya Cao, Li Shang, Feng Shi

PMC · DOI: 10.3390/biom16020256 · Biomolecules · 2026-02-05

## TL;DR

This paper reviews molecular changes in nasopharyngeal carcinoma, focusing on how these insights can improve early detection and treatment.

## Contribution

The paper highlights recent molecular discoveries in NPC and their clinical implications for early intervention and therapy.

## Key findings

- Molecular abnormalities in NPC precede visible tumor changes and can inform early detection.
- Integration of histopathology, EBV biomarkers, and imaging improves NPC diagnosis.
- Immunotherapy shows promise in treating advanced NPC, guided by molecular insights.

## Abstract

Nasopharyngeal carcinoma (NPC) represents an Epstein–Barr virus (EBV)-associated malignancy showing elevated incidence in East and Southeast Asia. Early detection remains vital, as molecular abnormalities precede visible histological changes during tumor development. This review summarizes recent progress in decoding NPC’s molecular profile, including genetic mutations, epigenetic alterations, non-coding RNA networks and proteomic alterations. Importantly, these molecular discoveries are increasingly informing clinical approaches to disease management. Modern diagnostic integration of histopathology, EBV biomarkers and advanced imaging has improved detection, yet locoregional recurrence and distant metastasis remain major causes of mortality. Immunotherapy shows promising efficacy in recurrent/metastatic NPC, underscoring the potential of molecular insights to guide therapeutic innovation.

## Linked entities

- **Diseases:** Nasopharyngeal carcinoma (MONDO:0015459)

## Full-text entities

- **Genes:** CCNA1 (cyclin A1) [NCBI Gene 8900] {aka CT146}, CDKN2B (cyclin dependent kinase inhibitor 2B) [NCBI Gene 1030] {aka CDK4I, INK4B, MTS2, P15, TP15, p15INK4b}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, MIR1321 (microRNA 1321) [NCBI Gene 100302171] {aka MIRN1321, hsa-mir-1321}, SEPTIN9 (septin 9) [NCBI Gene 10801] {aka AF17q25, MSF, MSF1, PNUTL4, SEPT9, SINT1}, BCYRN1 (brain cytoplasmic RNA 1) [NCBI Gene 618] {aka BC200, BC200a, LINC00004, NCRNA00004}, MIR22 (microRNA 22) [NCBI Gene 407004] {aka MIRN22, hsa-mir-22, miR-22}, TP73 (tumor protein p73) [NCBI Gene 7161] {aka CILD47, P73}, MIR205 (microRNA 205) [NCBI Gene 406988] {aka MIRN205, mir-205}, CHL1 (cell adhesion molecule L1 like) [NCBI Gene 10752] {aka CALL, L1CAM2}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, SLC3A2 (solute carrier family 3 member 2) [NCBI Gene 6520] {aka 4F2, 4F2HC, 4T2HC, CD98, CD98HC, MDU1}, PTK2 (protein tyrosine kinase 2) [NCBI Gene 5747] {aka FADK, FADK 1, FAK, FAK1, FRNK, PPP1R71}, MTAP (methylthioadenosine phosphorylase) [NCBI Gene 4507] {aka BDMF, DMSFH, DMSMFH, HEL-249, LGMBF, MSAP}, MIR1275 (microRNA 1275) [NCBI Gene 100302123] {aka MIRN1275, hsa-mir-1275, mir-1275}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, POU3F3 (POU class 3 homeobox 3) [NCBI Gene 5455] {aka BRN1, OTF8, SNIBFIS, brain-1, oct-8}, MIR650 (microRNA 650) [NCBI Gene 723778] {aka MIRN650, hsa-mir-650}, DAPK1 (death associated protein kinase 1) [NCBI Gene 1612] {aka DAPK, ROCO3}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, NFATC2 (nuclear factor of activated T cells 2) [NCBI Gene 4773] {aka JCOSL, NFAT1, NFATP}, FGF5 (fibroblast growth factor 5) [NCBI Gene 2250] {aka HBGF-5, Smag-82, TCMGLY}, USP44 (ubiquitin specific peptidase 44) [NCBI Gene 84101], CYLD (CYLD lysine 63 deubiquitinase) [NCBI Gene 1540] {aka BRSS, CDMT, CYLD1, CYLDI, EAC, FTDALS8}, HMGB1P5 (high mobility group box 1 pseudogene 5) [NCBI Gene 10354] {aka HMG-1, HMG1L5, HMGB1L15, HMGB1L5, HMGB1P2}, MIR638 (microRNA 638) [NCBI Gene 693223] {aka MIRN638, hsa-mir-638}, KRT75 (keratin 75) [NCBI Gene 9119] {aka CK-75, K6HF, K75, KB18, PFB, hK6hf}, LOC121627959 (TPT1-like) [NCBI Gene 121627959], MIR1234 (microRNA 1234) [NCBI Gene 100302196] {aka MIRN1234, hsa-mir-1234}, STMN1 (stathmin 1) [NCBI Gene 3925] {aka C1orf215, LAP18, Lag, OP18, PP17, PP19}, TNFRSF1A (TNF receptor superfamily member 1A) [NCBI Gene 7132] {aka CD120a, FPF, TBP1, TNF-R, TNF-R-I, TNF-R55}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, UCHL1 (ubiquitin C-terminal hydrolase L1) [NCBI Gene 7345] {aka HEL-117, HEL-S-53, NDGOA, PARK5, PGP 9.5, PGP9.5}, FAM225A (family with sequence similarity 225 member A) [NCBI Gene 286333] {aka C9orf109, LINC00256A, NCRNA00256A}, MIR4478 (microRNA 4478) [NCBI Gene 100616312] {aka mir-4478}, MIR572 (microRNA 572) [NCBI Gene 693157] {aka MIRN572, hsa-mir-572}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, FGF3 (fibroblast growth factor 3) [NCBI Gene 2248] {aka HBGF-3, INT2}, RASSF1 (Ras association domain family member 1) [NCBI Gene 11186] {aka 123F2, NORE2A, RASSF1A, RDA32, REH3P21}, WIF1 (Wnt inhibitory factor 1) [NCBI Gene 11197] {aka WIF-1}, S100A4 (S100 calcium binding protein A4) [NCBI Gene 6275] {aka 18A2, 42A, CAPL, FSP1, MTS1, P9KA}, MIR1203 (microRNA 1203) [NCBI Gene 100302211] {aka MIRN1203, hsa-mir-1203}, MIR1293 (microRNA 1293) [NCBI Gene 100302220] {aka MIRN1293, hsa-mir-1293, mir-1293}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, MIR6834 (microRNA 6834) [NCBI Gene 102465501] {aka hsa-mir-6834}, S100A2 (S100 calcium binding protein A2) [NCBI Gene 6273] {aka CAN19, S100L}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MIR4730 (microRNA 4730) [NCBI Gene 100616359], MIR3714 (microRNA 3714) [NCBI Gene 100500913], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, MIR1202 (microRNA 1202) [NCBI Gene 100302259] {aka MIRN1202, hsa-mir-1202}, FGF4 (fibroblast growth factor 4) [NCBI Gene 2249] {aka FGF-4, HBGF-4, HST, HST-1, HSTF-1, HSTF1}, IMPA2 (inositol monophosphatase 2) [NCBI Gene 3613], PVT1 (Pvt1 oncogene) [NCBI Gene 5820] {aka LINC00079, MIR1204HG, NCRNA00079, TP53LC09, onco-lncRNA-100}, PSMB9 (proteasome 20S subunit beta 9) [NCBI Gene 5698] {aka LMP2, PRAAS3, PRAAS6, PSMB6i, RING12, beta1i}, TGFBR2 (transforming growth factor beta receptor 2) [NCBI Gene 7048] {aka AAT3, FAA3, LDS1B, LDS2, LDS2B, MFS2}, ITGB3 (integrin subunit beta 3) [NCBI Gene 3690] {aka BDPLT16, BDPLT2, BDPLT24, CD61, FMAIT1, GP3A}
- **Diseases:** stage III/IV disease (MESH:D007676), infection (MESH:D007239), nodal (MESH:D013611), metastasis (MESH:D009362), benign hyperplasia (MESH:D006965), benign lesions (MESH:D001932), NPC (MESH:D000077274), post-transplant lymphoproliferative disease (MESH:D008232), mucosal abnormalities (MESH:D052016), nasopharyngeal lesions (MESH:D009302), cancer (MESH:D009369), EBV infection (MESH:D020031), injury to (MESH:D014947), inflammation (MESH:D007249), tumor virus (MESH:D014412), Nasopharyngeal Cancer (MESH:D009303), basaloid squamous cell carcinoma (MESH:D002294), non-keratinizing carcinoma (MESH:D002289), gastric cancers (MESH:D013274), oncogenesis (MESH:D063646)
- **Chemicals:** FDG (MESH:D019788), LBL-007 (-), alcohol (MESH:D000438), nivolumab (MESH:D000077594), formalin (MESH:D005557), fluciclovine F-18 (MESH:C117460), m6A (MESH:C005955), camrelizumab (MESH:C000631724), sintilimab (MESH:C000632826), gallium Ga-68 DOTATATE (MESH:C513399), toripalimab (MESH:C000656314), lutetium Lu-177 DOTATATE (MESH:C447941), ipilimumab (MESH:D000074324), tislelizumab (MESH:C000707970)
- **Species:** human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Homo sapiens (human, species) [taxon 9606], Nicotiana tabacum (American tobacco, species) [taxon 4097]
- **Mutations:** AUC of 0, T2T

## Full text

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## Figures

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## References

131 references — full list in the complete paper: https://tomesphere.com/paper/PMC12938178/full.md

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Source: https://tomesphere.com/paper/PMC12938178