# Loss of p53 Provokes NF-κB-Dependent Disruption of Nucleolar Cap and Nucleoplasmic Redistribution of Fibrillarin During Nucleolar Stress

**Authors:** Takeru Torii, Mako Sumida, Atsushi Kobayashi, Toshiyuki Goto, Ryosuke Suzuki, Shin Kuwamoto, Wataru Nakajima, Wataru Sugimoto, Kohei Takeuchi, Yuma Tanaya, Masayuki Tera, Nobuyuki Tanaka, Hiroaki Hirata, Hisae Tateishi-Karimata, Takahito Nishikata, Miwako Kato Homma, Daisuke Miyoshi, Keiko Kawauchi

PMC · DOI: 10.3390/biom16020296 · Biomolecules · 2026-02-13

## TL;DR

Loss of p53 causes nucleolar changes during chemotherapy, leading to FBL redistribution and G4-related gene regulation.

## Contribution

Identifies a p53-dependent mechanism linking nucleolar disruption to G4-associated transcription via FBL, CK2α, and MAZ.

## Key findings

- Loss of p53 leads to NF-κB-dependent nucleolar cap disruption during doxorubicin treatment.
- Fibrillarin relocates to nucleoplasm and associates with G4 structures in p53-deficient cells.
- FBL redistribution correlates with CK2α and MAZ in G4-associated transcriptional regulation.

## Abstract

Chemotherapeutic agents targeting ribosome biogenesis induce profound reorganization of nucleolar architecture, yet how the tumor suppressor p53 governs these structural responses remains unclear. Here, we show that loss of p53 leads to NF-κB-dependent disappearance of nucleolar caps induced by doxorubicin (DOXO). Under these conditions, fibrillarin (FBL), which is normally confined to the nucleolus, relocates to the nucleoplasm and forms foci that partially associate with G-quadruplex (G4) structures, non-canonical nucleic acid secondary structures enriched at transcriptionally active genomic regions. To examine whether this redistribution is linked to transcriptional changes, we integrated publicly available transcriptomic datasets and identified genes that were upregulated in p53-deficient cells under DOXO treatment and downregulated upon FBL depletion. Given that casein kinase 2 alpha (CK2α) is a nuclear binding partner of FBL, we further analyzed CK2α-dependent gene programs. This analysis revealed that a fraction of FBL-responsive genes overlapped with CK2α-dependent signatures and were enriched for promoter-proximal G4 structures. Among candidate regulators, the G4-binding transcription factor MAZ emerged as a potential mediator linking nucleoplasmic FBL and CK2α to G4-associated transcriptional regulation. Together, our findings identify a mechanism linking loss of p53 to G4-associated transcriptional reprogramming through nucleolar architectural disruption mediated by an FBL–CK2α–MAZ axis during DOXO treatment.

## Linked entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], FBL (fibrillarin rRNA 2'-O-methyltransferase) [NCBI Gene 2091], ck2a (casein kinase 2 alpha subunit) [NCBI Gene 445749], MAZ (MYC associated zinc finger protein) [NCBI Gene 4150]
- **Proteins:** TP53 (tumor protein p53), NFKB1 (nuclear factor kappa B subunit 1), Fib (Fibrillarin), ck2a (casein kinase 2 alpha subunit), MAZ (MYC associated zinc finger protein)
- **Chemicals:** doxorubicin (PubChem CID 31703)

## Full-text entities

- **Genes:** PRC1 (protein regulator of cytokinesis 1) [NCBI Gene 9055] {aka ASE1, MAP65}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, ACTD (Acetabular dysplasia) [NCBI Gene 780896], NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, CSNK2A2 (casein kinase 2 alpha 2) [NCBI Gene 1459] {aka CK2A2, CK2alpha', CSNK2A1}, MAZ (MYC associated zinc finger protein) [NCBI Gene 4150] {aka PUR1, Pur-1, SAF-1, SAF-2, SAF-3, ZF87}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, NPM1 (nucleophosmin 1) [NCBI Gene 4869] {aka B23, NPM}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, PPIA (peptidylprolyl isomerase A) [NCBI Gene 5478] {aka CYPA, CYPH, HEL-S-69p}, KHSRP (KH-type splicing regulatory protein) [NCBI Gene 8570] {aka FBP2, FUBP2, KSRP, p75}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) [NCBI Gene 3178] {aka ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, MPD3}, RPL5 (ribosomal protein L5) [NCBI Gene 6125] {aka L5, MSTP030, PPP1R135, uL18}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, FBL (fibrillarin rRNA 2'-O-methyltransferase) [NCBI Gene 2091] {aka FIB, FLRN, Nop1, RNU3IP1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TNFAIP3 (TNF alpha induced protein 3) [NCBI Gene 7128] {aka A20, AIFBL1, AISBL, OTUD7C, TNFA1P2}, RPL11 (ribosomal protein L11) [NCBI Gene 6135] {aka DBA7, GIG34, L11, uL5}, YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, NUCLEOLIN (nucleolin multifunctional protein) [NCBI Gene 4691] {aka C23, NCL, Nsr1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, FBXO5 (F-box protein 5) [NCBI Gene 26271] {aka EMI1, FBX5, Fbxo31}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, SRSF2 (serine and arginine rich splicing factor 2) [NCBI Gene 6427] {aka PR264, SC-35, SC35, SFRS2, SFRS2A, SRp30b}, LMNB2 (lamin B2) [NCBI Gene 84823] {aka EPM9, LAMB2, LMN2, MCPH27}
- **Diseases:** deficient (MESH:D007153), colon cancer (MESH:D015179), DFC (MESH:D015432), cytotoxic (MESH:D064420), breast cancer (MESH:D001943), injury to (MESH:D014947), inflammatory (MESH:D007249), Retrovirus Infection (MESH:D012192), Cancer (MESH:D009369)
- **Chemicals:** Alexa Fluor 488, 546, (-), cisplatin (MESH:D002945), DOXO (MESH:D004317), Actinomycin D (MESH:D003609), puromycin (MESH:D011691), penicillin (MESH:D010406), mitomycin C (MESH:D016685), G4 (MESH:D004003), Alexa Fluor 488 (MESH:C000711379), PFA (MESH:C003043), 4',6-diamidino-2-phenylindole (MESH:C007293), BAS (MESH:D001464), NaCl (MESH:D012965), EDTA (MESH:D004492), Triton X-100 (MESH:D017830), streptomycin (MESH:D013307), guanine (MESH:D006147), aspirin (MESH:D001241), NaF (MESH:D012969), SDS (MESH:D012967)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** W23S, L22Q, R175H
- **Cell lines:** RPE — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_4388), MV-4-11 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0064), U937 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_0007), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937983/full.md

## References

82 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937983/full.md

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Source: https://tomesphere.com/paper/PMC12937983