# Neuron-Derived Sema3B Facilitates Microglial Hematoma Clearance After Intracerebral Hemorrhage

**Authors:** Baisong Huang, Anqi Chen, Tong Zhou, Ying Xu, Yuanyuan Sun, Quanwei He

PMC · DOI: 10.3390/antiox15020220 · Antioxidants · 2026-02-08

## TL;DR

This study shows that neuron-derived Sema3B helps microglia clear brain hematomas and reduce inflammation after intracerebral hemorrhage, offering a potential new treatment strategy.

## Contribution

The study identifies Sema3B as a novel regulator of microglial phagocytosis and inflammation after ICH.

## Key findings

- Sema3B binds to PlexinA1 on microglia, activating NRF2 to promote TREM2 and HO-1 expression.
- Sema3B enhances microglial phagocytosis of hematoma by strengthening the interaction between PlexinA1 and TREM2.
- Sema3B induces M2 polarization of microglia, exerting anti-inflammatory effects.

## Abstract

Intracerebral hemorrhage (ICH) is the deadliest subtype of stroke, and its primary harm to the human body arises from the formation of brain hematomas. Promoting microglial-mediated endogenous hematoma clearance has become a key focus in current ICH treatment strategies. Semaphorin 3s (Sema3s) are molecular signals involved in the regulation of the central nervous system, angiogenesis, and microenvironment homeostasis, and they are closely associated with various central nervous system diseases. Hematoma clearance and inflammation regulation are crucial to the role of microglia, yet the mechanisms by which Sema3s regulate microglia after ICH remain unclear. Here, using high-throughput RNA sequencing of a mouse ICH model, we identified that neuron-derived Sema3B is downregulated after ICH. Further mechanistic studies revealed that Sema3B can bind to PlexinA1 on microglia, activating NRF2 to promote the expression of the phagocytic receptor TREM2 and the key hematoma clearance molecule HO-1. Furthermore, Sema3B enhances the interaction between PlexinA1 and TREM2, cooperatively boosting microglial phagocytosis of the hematoma after ICH. Furthermore, Sema3B regulates the M2 polarization of microglia, exerting an anti-inflammatory effect. Our findings suggest that manipulating microglial phagocytosis of hematoma and inflammation suppression via regulation of Sema3B may be a potential strategy for treating patients with ICH.

## Linked entities

- **Genes:** SEMA3B (semaphorin 3B) [NCBI Gene 7869], PLXNA1 (plexin A1) [NCBI Gene 5361], GABPA (GA binding protein transcription factor subunit alpha) [NCBI Gene 2551], TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209], HMOX1 (heme oxygenase 1) [NCBI Gene 3162]
- **Diseases:** intracerebral hemorrhage (MONDO:0013792), stroke (MONDO:0005098)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Mir155 (microRNA 155) [NCBI Gene 387173] {aka Mirn155, mir-155, mmu-mir-155}, SEMA3C (semaphorin 3C) [NCBI Gene 10512] {aka SEMAE, SemE}, Hmox1 (heme oxygenase 1) [NCBI Gene 15368] {aka D8Wsu38e, HO-1, HO1, Hemox, Hmox, Hsp32}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Iba1 (induction of brown adipocytes 1) [NCBI Gene 114737], Ccl4 (C-C motif chemokine ligand 4) [NCBI Gene 20303] {aka AT744.1, Act-2, MIP-1B, Mip1b, Scya4}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Nfkbia (nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha) [NCBI Gene 18035] {aka Nfkbi}, Tacstd2 (tumor-associated calcium signal transducer 2) [NCBI Gene 56753] {aka EGP-1, GA733-1, Ly97, TROP2}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Syk (spleen tyrosine kinase) [NCBI Gene 20963] {aka Sykb}, Drc12 (dynein regulatory complex subunit 12) [NCBI Gene 270150] {aka Ccdc153}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, SEMA3G (semaphorin 3G) [NCBI Gene 56920] {aka sem2}, PLXNA1 (plexin A1) [NCBI Gene 5361] {aka DWOPNED, NOV, NOVP, PLEXIN-A1, PLXN1}, Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B) [NCBI Gene 20347] {aka SemA, Semaa, sema5, semaV}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, Kcnk5 (potassium channel, subfamily K, member 5) [NCBI Gene 16529] {aka KCNK5b, TASK-2}, SEMA3A (semaphorin 3A) [NCBI Gene 10371] {aka COLL1, HH16, Hsema-I, Hsema-III, SEMA1, SEMAD}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Plxna1 (plexin A1) [NCBI Gene 18844] {aka 2600013D04Rik, NOV, PlexA1, Plxn1, mKIAA4053}, SEMA3B (semaphorin 3B) [NCBI Gene 7869] {aka LUCA-1, SEMA5, SEMAA, SemA, semaV}, Trem2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 83433] {aka TREM-2, Trem2a, Trem2b, Trem2c}, TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, SEMA3D (semaphorin 3D) [NCBI Gene 223117] {aka Sema-Z2, coll-2}, Rela (Rela proto-oncogene, NFKB subunit) [NCBI Gene 19697] {aka p65, p65 NF-kappa B, p65 NFkB}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, Clec4d (C-type lectin domain family 4, member d) [NCBI Gene 17474] {aka Clecsf8, Mpcl, mcl}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Tyrobp (TYRO protein tyrosine kinase binding protein) [NCBI Gene 22177] {aka DAP12, KARAP, Ly83}, Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}
- **Diseases:** diabetes (MESH:D003920), inflammatory damage (MESH:D018746), neurotoxic (MESH:D020258), Alzheimer's disease (MESH:D000544), neuroinflammation (MESH:D000090862), schizophrenia (MESH:D012559), CNS disorders (MESH:D002493), swelling (MESH:D004487), Hematoma (MESH:D006406), cerebral hypoperfusion (MESH:D002547), Inflammation (MESH:D007249), cytotoxic injury (MESH:D014947), neurodegenerative and cerebrovascular disorders (MESH:D019636), Parkinson's disease (MESH:D010300), clotting disorders (MESH:D020141), peripheral nerve injury (MESH:D059348), pain (MESH:D010146), neuroblastoma (MESH:D009447), PTSD (MESH:D013313), Neurological Deficit (MESH:D009461), Hemorrhage (MESH:D006470), white matter injury (MESH:D056784), cerebral edema (MESH:D001929), stroke (MESH:D020521), ischemic stroke (MESH:D002544), infection (MESH:D007239), ICH (MESH:D002543), death (MESH:D003643), hypertension (MESH:D006973), brain injury (MESH:D001930), brain herniation (MESH:D001927), tissue injury (MESH:D017695), cognitive decline (MESH:D003072), neurological impairment (MESH:D009422), depression (MESH:D003866), inflammatory cytokines (MESH:D000080424), neuronal death (MESH:D009410)
- **Chemicals:** streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), saline (MESH:D012965), 1,1'-Dioctadecyl-3,3,3',3'-Tetramethylindodicarbocyanine (MESH:C576569), ethanol (MESH:D000431), TRIzol (MESH:C411644), DiD (MESH:D017878), iron (MESH:D007501), isoflurane (MESH:D007530), heme (MESH:D006418), 4-Chlorobenzenesulfonate Salt (-), penicillin (MESH:D010406), PVDF (MESH:C024865), PBS (MESH:D007854), DAPI (MESH:C007293), povidone-iodine (MESH:D011206), SYBR Green (MESH:C098022), agarose (MESH:D012685), paraformaldehyde (MESH:C003043)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), N2a — Mus musculus (Mouse), Mouse neuroblastoma, Cancer cell line (CVCL_0470), BV2 — Mus musculus (Mouse), Transformed cell line (CVCL_0182)

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## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937951/full.md

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Source: https://tomesphere.com/paper/PMC12937951