# The Role of Non-LTR Retrotransposons in Sterile Inflammation: Mechanisms and Therapeutic Potential

**Authors:** Hua Yang, Xin Chen, Tamara Saksida, Melita Vidaković, Sizhuo Chen, Vuk Savkovic, Mingyue Chen, Shaobin Wang, Zhenhuan Zhao

PMC · DOI: 10.3390/biomedicines14020272 · Biomedicines · 2026-01-26

## TL;DR

Non-LTR retrotransposons can trigger sterile inflammation by acting as endogenous danger signals, contributing to chronic diseases and offering new therapeutic targets.

## Contribution

This review provides new insights into how non-LTR retrotransposons drive sterile inflammation and explores potential therapeutic strategies.

## Key findings

- Non-LTR retrotransposons act as DAMP-like signals, inducing sterile inflammation in various tissues.
- LINE and SINE elements contribute to genomic instability and chronic inflammatory diseases.
- Therapeutic approaches targeting retrotransposon activity or inflammatory signaling are emerging.

## Abstract

Non-long terminal repeat (Non-LTR) retrotransposons are mobile genetic elements that replicate through a “copy-and-paste” mechanism, enabling their expansion within the genome. Aberrant activation of these elements can induce genomic instability, elicit cellular stress responses, and activate inflammasome signaling, leading to tissue injury and disease. The central process of sterile inflammation involves the release and recognition of damage-associated molecular patterns (DAMPs), endogenous molecules that initiate inflammatory responses and form a common basis for many sterile inflammatory disorders. Recent studies have identified non-LTR retrotransposons as key endogenous triggers of DAMP-like signaling that drive sterile inflammation in both neuronal and non-neuronal tissues, contributing to the development of neurodegenerative and other chronic inflammatory diseases. In this review, we summarize recent advances in understanding how non-LTR retrotransposons, particularly LINE and SINE elements, influence sterile inflammation and disease pathogenesis. We highlight how their mobilization reshapes genomic architecture and gene regulation, and how the resulting signaling cascades promote chronic inflammation, immune dysregulation, and tissue injury. We also discuss emerging therapeutic strategies aimed at suppressing retrotransposon activity or interrupting downstream inflammatory signaling for treating sterile inflammation-related diseases.

## Full-text entities

- **Genes:** IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, ZBP1 (Z-DNA binding protein 1) [NCBI Gene 81030] {aka C20orf183, DAI, DLM-1, DLM1}, DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, ADAR (adenosine deaminase RNA specific) [NCBI Gene 103] {aka ADAR1, AGS6, DRADA, DSH, DSRAD, G1P1}, DDX17 (DEAD-box helicase 17) [NCBI Gene 10521] {aka P72, RH70}, Myd88 (myeloid differentiation primary response gene 88) [NCBI Gene 17874], STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, RIPK3 (receptor interacting serine/threonine kinase 3) [NCBI Gene 11035] {aka RIP3}, NLRC4 (NLR family CARD domain containing 4) [NCBI Gene 58484] {aka AIFEC, CARD12, CLAN, CLAN1, CLANA, CLANB}, TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, Ofd1 (OFD1, centriole and centriolar satellite protein) [NCBI Gene 237222] {aka Cxorf5, DXGgc7e, ORF2}, Cgas (cyclic GMP-AMP synthase) [NCBI Gene 214763] {aka E330016A19Rik, Mb21d1}, PYCARD (PYD and CARD domain containing) [NCBI Gene 29108] {aka ASC, CARD5, TMS, TMS-1, TMS1}, MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, Sting1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 72512] {aka 2610307O08Rik, ERIS, MPYS, Mita, STING, STING-beta}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, Trim41 (tripartite motif-containing 41) [NCBI Gene 211007] {aka RINCK}, ORF1 [NCBI Gene 55354], DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Kdm4b (lysine (K)-specific demethylase 4B) [NCBI Gene 193796] {aka 4732474L06Rik, Jmjd2b}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, TREX1 (three prime repair exonuclease 1) [NCBI Gene 11277] {aka AGS1, CRV, DRN3, HERNS, RVCLS}, CASP8 (caspase 8) [NCBI Gene 841] {aka ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5}
- **Diseases:** retinal pigment epithelial cell degeneration (MESH:C537835), ALS (MESH:D008113), SINEs (MESH:C565217), infectious (MESH:D003141), tissue injury (MESH:D017695), SLE (MESH:D008180), bilateral blindness (MESH:D001766), necrotic (MESH:D009336), genetic diseases (MESH:D030342), MS (MESH:D009103), metabolic disorders (MESH:D008659), joint destruction (MESH:D008105), immune dysregulation (OMIM:614878), Non-infectious inflammatory diseases (MESH:D000073296), GA (MESH:D057092), breast cancer (MESH:D001943), inflammatory bowel disease (MESH:D015212), autoimmune diseases (MESH:D001327), neuroinflammation (MESH:D000090862), proteinopathies (MESH:D057165), AMD (MESH:D008268), PSP (MESH:D011030), primary (MESH:D010538), SS (MESH:D012859), sterile (MESH:D007246), immune abnormalities (MESH:D007154), Alzheimer's disease (MESH:D000544), atherosclerosis (MESH:D050197), AGS (MESH:C535607), metabolic syndrome (MESH:D024821), ERA (MESH:D001172), inflammation (MESH:D007249), FTD-ALS (OMIM:105550), injury to (MESH:D014947), neurodegeneration (MESH:D019636)
- **Chemicals:** ROS (MESH:D017382), lamivudine (MESH:D019259), MTX (MESH:D008727), Cl- (MESH:D002713), cGAMP (MESH:C584311), Na+ (MESH:D012964), K+ (MESH:D011188), TPN-101 (-)
- **Species:** Human immunodeficiency virus 1 (no rank) [taxon 11676], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** LINE-1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

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## Figures

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## References

90 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937946/full.md

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Source: https://tomesphere.com/paper/PMC12937946