# A Single-Cell Perspective on Remapping Human Adult Neurogenesis and Its Clinical Implications

**Authors:** Xin Tian, Renqing Zhao

PMC · DOI: 10.3390/biom16020331 · Biomolecules · 2026-02-22

## TL;DR

This review explores how single-cell RNA sequencing helps understand human brain cell development and its role in neurological diseases.

## Contribution

The paper provides an integrative perspective on human hippocampal neurogenesis and its clinical implications using single-cell RNA sequencing.

## Key findings

- scRNA-seq reveals altered neural cell populations in neurological diseases.
- Disease-specific cell subtypes and gene signatures are linked to cognitive function.
- scRNA-seq supports drug discovery for neurological and other disorders.

## Abstract

Recent advances in single-cell RNA sequencing (scRNA-seq) have substantially deepened our understanding of adult hippocampal neurogenesis (AHN), enabling the detection of neural stem cells, progenitors, and immature neurons in postmortem human brain tissue and revealing how these populations are altered in neurological disease. Additionally, scRNA-seq enables the identification of disease-specific cell subtypes and distinct gene expression signatures associated with neurological disorders, many of which are linked to alterations in AHN and cognitive function. Such cellular- and molecular-level insights into neurological disease mechanisms provide a strong foundation for the development of targeted therapeutic strategies. Indeed, scRNA-seq has also emerged as a powerful tool in drug discovery and development across multiple disease areas, including cancer, cardiovascular disorders, and neurological conditions. In this review, we offer a comprehensive and integrative perspective on the cellular and molecular landscape of human hippocampal neurogenesis, the pathological mechanisms underlying neurological disorders, and their implications for therapeutic development.

## Linked entities

- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915] {aka CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu}, CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524] {aka CCRL1, CMKBRL1, CMKDR1, GPR13, GPRV28, V28}, STMN1 (stathmin 1) [NCBI Gene 3925] {aka C1orf215, LAP18, Lag, OP18, PP17, PP19}, GLUL (glutamate-ammonia ligase) [NCBI Gene 2752] {aka DEE116, GLNS, GS, PIG43, PIG59}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, TACR1 (tachykinin receptor 1) [NCBI Gene 6869] {aka NK1R, NKIR, SPR, TAC1R}, P2RY12 (purinergic receptor P2Y12) [NCBI Gene 64805] {aka ADPG-R, BDPLT8, HORK3, P2T(AC), P2Y(12)R, P2Y(AC)}, NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, RBFOX3 (RNA binding fox-1 homolog 3) [NCBI Gene 146713] {aka FOX-3, FOX3, HRNBP3, NEUN}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, LPAR1 (lysophosphatidic acid receptor 1) [NCBI Gene 1902] {aka EDG2, Gpcr26, LPA1, Mrec1.3, VZG1, edg-2}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, MEF2C (myocyte enhancer factor 2C) [NCBI Gene 4208] {aka C5DELq14.3, DEL5q14.3, NEDHSIL}, HES6 (hes family bHLH transcription factor 6) [NCBI Gene 55502] {aka C-HAIRY1, HES-6, bHLHb41, bHLHc23}, NR2F2 (nuclear receptor subfamily 2 group F member 2) [NCBI Gene 7026] {aka ARP-1, ARP1, CHTD4, COUPTF2, COUPTFB, COUPTFII}, HSBP1 (heat shock factor binding protein 1) [NCBI Gene 3281] {aka NPC-A-13}, CRYAB (crystallin alpha B) [NCBI Gene 1410] {aka CMD1II, CRYA2, CTPP2, CTRCT16, HEL-S-101, HSPB5}, LRRK2 (leucine rich repeat kinase 2) [NCBI Gene 120892] {aka AURA17, DARDARIN, PARK8, RIPK7, ROCO2}, NEAT1 (nuclear paraspeckle assembly transcript 1) [NCBI Gene 283131] {aka LINC00084, NCRNA00084, TP53LC15, TncRNA, VINC}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, CLU (clusterin) [NCBI Gene 1191] {aka AAG4, APO-J, APOJ, CLI, CLU1, CLU2}, ELAVL4 (ELAV like RNA binding protein 4) [NCBI Gene 1996] {aka HUD, PNEM}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, CD24 (CD24 molecule) [NCBI Gene 100133941] {aka CD24A}, STMN2 (stathmin 2) [NCBI Gene 11075] {aka SCG10, SCGN10}, P2RY13 (purinergic receptor P2Y13) [NCBI Gene 53829] {aka FKSG77, GPCR1, GPR86, GPR94, P2Y13, SP174}, PROX1 (prospero homeobox 1) [NCBI Gene 5629], HLA-E (major histocompatibility complex, class I, E) [NCBI Gene 3133] {aka HLA-6.2, QA1}, FGFR3 (fibroblast growth factor receptor 3) [NCBI Gene 2261] {aka ACH, CD333, CEK2, HSFGFR3EX, JTK4}, NEU1 (neuraminidase 1) [NCBI Gene 4758] {aka NANH, NEU, SIAL1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, PCDH8 (protocadherin 8) [NCBI Gene 5100] {aka ARCADLIN, PAPC}, ID3 (inhibitor of DNA binding 3) [NCBI Gene 3399] {aka HEIR-1, bHLHb25}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, NRXN1 (neurexin 1) [NCBI Gene 9378] {aka Hs.22998, PTHSL2, SCZD17}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, DCX (doublecortin) [NCBI Gene 1641] {aka DBCN, DC, LISX, SCLH, XLIS}, GRIA1 (glutamate ionotropic receptor AMPA type subunit 1) [NCBI Gene 2890] {aka GLUH1, GLUR1, GLURA, GluA1, HBGR1, MRD67}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, LDLRAD3 (low density lipoprotein receptor class A domain containing 3) [NCBI Gene 143458] {aka LRAD3}, ETNPPL (ethanolamine-phosphate phospho-lyase) [NCBI Gene 64850] {aka AGXT2L1}, ASCL1 (achaete-scute family bHLH transcription factor 1) [NCBI Gene 429] {aka ASH1, HASH1, MASH1, bHLHa46}, OLIG2 (oligodendrocyte transcription factor 2) [NCBI Gene 10215] {aka BHLHB1, OLIGO2, PRKCBP2, RACK17, bHLHe19}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, HSPA1A (heat shock protein family A (Hsp70) member 1A) [NCBI Gene 3303] {aka HEL-S-103, HSP70, HSP70-1, HSP70-1A, HSP70-2, HSP70.1}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, KIAA1217 (KIAA1217) [NCBI Gene 56243] {aka ETL4, SKT}, NRXN3 (neurexin 3) [NCBI Gene 9369] {aka C14orf60}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}
- **Diseases:** brain tumors (MESH:D001932), dopaminergic (MESH:D009422), cognitive decline (MESH:D003072), glioblastoma (MESH:D005909), MS (MESH:D009103), dementia (MESH:D003704), depression (MESH:D003866), degeneration (MESH:D009410), vascular dysfunction (MESH:D002561), cardiovascular disorders (MESH:D002318), sudden unexpected death (MESH:D000080485), brain disorders (MESH:D001927), amyotrophic lateral sclerosis (MESH:D000690), Epilepsy (MESH:D004827), NFTs (MESH:D055956), NPC (MESH:D052556), seizure (MESH:D012640), MDD (MESH:D003865), Neurological Disorders (MESH:D009461), ST (MESH:D020521), refractory epilepsy (MESH:D000069279), neurological disease (MESH:D020271), prion diseases (MESH:D017096), neuroinflammation (MESH:D000090862), TLE (MESH:D004833), AHN (MESH:D001750), cancer (MESH:D009369), HTD (MESH:D006816), AD (MESH:D000544), neuropsychiatric disorders (MESH:D001523), IPD (MESH:D010300), inflammation (MESH:D007249), DAM (MESH:D004194), neurodegeneration (MESH:D019636), injury to (MESH:D014947)
- **Chemicals:** formalin (MESH:D005557), Mn (MESH:D008345), Cadmium (MESH:D002104), thymidine (MESH:D013936), AHN (-), glutamate (MESH:D018698), BrdU (MESH:D001973), 3H (MESH:D014316), metal (MESH:D008670)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rodentia (rodent, order) [taxon 9989], Danio rerio (leopard danio, species) [taxon 7955], Macaca (macaque, genus) [taxon 9539], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** E280A

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12937870/full.md

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937870/full.md

## References

138 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937870/full.md

---
Source: https://tomesphere.com/paper/PMC12937870