# Generation of Human Haematopoietic Model Cell Lines Revealed Distinct Replication Stress Tolerance Between Two Oncogenic KRAS Mutations, G12V and A146T

**Authors:** Mone Okuda, Ryotaro Kawasumi, Kayoko Tanaka, Kouji Hirota

PMC · DOI: 10.3390/biom16020204 · Biomolecules · 2026-01-28

## TL;DR

Researchers created human cell lines to compare how two KRAS mutations affect replication stress and cancer cell survival, finding distinct responses that could guide targeted therapies.

## Contribution

The study introduces isogenic haematopoietic cell lines to compare KRAS.A146T and KRAS.G12V mutations, revealing their distinct replication stress tolerance.

## Key findings

- KRAS.A146T cells rely on PrimPol for survival under replication stress.
- KRAS.G12V cells are hypersensitive to ATR-Chk1 inhibitors and nucleoside analogues.
- Both mutations increase replication stress compared to wild-type KRAS.

## Abstract

KRAS is one of the most frequently mutated genes in all human cancers, and its oncogenic mutation hotspots are glycine 12 (G12), glycine 13 (G13), glutamine 61 (Q61) and alanine 146 (A146). Among these hotspot mutations, A146 substitution mutations (A146X) occur relatively infrequently, except for haematopoietic and lymphoid cancers, suggesting that A146X causes intrinsically distinct KRAS signalling compared to other KRAS oncogenic alleles. However, due to the absence of model A146X cell lines derived from haematopoietic sources, the cellular mechanisms that cause the differences between KRAS.A146X and other common KRAS mutants, such as KRAS.G12X, remain largely unexplored. In this study, we developed a set of isogenic model haematopoietic cell lines expressing KRAS.A146T, KRAS.G12V and KRAS.G12G (non-mutated) from the endogenous locus by genetically modifying the human lymphoblastoid TK6 cell line. We found that TK6 cells carrying KRASA146T/+ or KRASG12V/+ exhibited increased replication stress compared to KRAS wild-type cells. Strikingly, KRASA146T/+ cells strongly rely on PrimPol for maintaining cellular survival upon replication stress. In contrast, KRASG12V/+ cells exhibited hypersensitivity to inhibitors for the ATR-Chk1 checkpoint signalling axis and to nucleoside analogues commonly used to treat cancers and viral infections. Our findings demonstrate that the endogenously expressed oncogenic KRAS mutations exacerbate the replication stress and reveal KRAS allele-specific replication phenotypes, facilitating the development of effective chemotherapies tailored to specific oncogenic KRAS mutation alleles and types of cancer. Moreover, our study offers valuable model cell lines for investigating mechanisms underlying replication vulnerability in cancers harbouring oncogenic KRAS mutations.

## Linked entities

- **Genes:** KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845]
- **Proteins:** PRIMPOL (primase and DNA directed polymerase), ATR (ATR checkpoint kinase), CHEK1 (checkpoint kinase 1)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, HRAS (HRas proto-oncogene, GTPase) [NCBI Gene 3265] {aka C-BAS/HAS, C-H-RAS, C-HA-RAS1, CTLO, H-RASIDX, HAMSV}, H2ax (H2A.X variant histone) [NCBI Gene 15270] {aka H2A.X, H2afx, Hist5-2ax, gammaH2ax}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, Rnase1 (ribonuclease, RNase A family, 1 (pancreatic)) [NCBI Gene 19752] {aka Rib-1, Rib1}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, PRIMPOL (primase and DNA directed polymerase) [NCBI Gene 201973] {aka CCDC111, MYP22, Primpol1}, H2AX (H2A.X variant histone) [NCBI Gene 3014] {aka H2A.X, H2A/X, H2AFX}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, ARHGEF2 (Rho/Rac guanine nucleotide exchange factor 2) [NCBI Gene 9181] {aka GEF, GEF-H1, GEFH1, LFP40, Lfc, NEDMHM}, PDGFRB (platelet derived growth factor receptor beta) [NCBI Gene 5159] {aka CD140B, IBGC4, IMF1, JTK12, KOGS, OPDKD}, CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}
- **Diseases:** leukaemia (MESH:D015458), oncogenesis (MESH:D063646), hypersensitivity (MESH:D004342), cytotoxicity (MESH:D064420), cancer (MESH:D009369), viral infection (MESH:D014777), injury to (MESH:D014947), hereditary spherocytosis (MESH:D013103)
- **Chemicals:** ethanol (MESH:D000431), colcemid (MESH:D003703), Gemcitabine (MESH:D000093542), PBS (MESH:D007854), cytidine (MESH:D003562), HU (MESH:D006918), HCl (MESH:D006851), GDP (MESH:D006153), guanosine (MESH:D006151), VE821 (MESH:C560580), KU60019 (MESH:C546193), deoxyribonucleotide (MESH:D003854), nucleoside (MESH:D009705), ATP (MESH:D000255), L-glutamine (MESH:D005973), Ara-C (MESH:D003561), Triton X-100 (MESH:D017830), streptomycin (MESH:D013307), Ganciclovir (MESH:D015774), BrdU (MESH:D001973), aphidicolin (MESH:D016590), Cidofovir (MESH:D000077404), PI (MESH:D010716), penicillin (MESH:D010406), uridine (MESH:D014529), 5'-fluorodeoxyuridine (MESH:D005467), GTP (MESH:D006160), propidium iodide (MESH:D011419), A11001 (-), UCN-01 (MESH:C054852)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** A146, A146T, A146X, alanine 146, A164T, G12D, G12G, A146X, G13
- **Cell lines:** UCN-01 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_A1PP), WI-L2 — Homo sapiens (Human), Hereditary spherocytosis, Transformed cell line (CVCL_6544), TK6 — Homo sapiens (Human), Hereditary spherocytosis, Transformed cell line (CVCL_0561), WIL2-NS — Homo sapiens (Human), Hereditary spherocytosis, Transformed cell line (CVCL_2761), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), hTERT RPE-1 — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_4388)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12937729/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937729/full.md

## References

67 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937729/full.md

---
Source: https://tomesphere.com/paper/PMC12937729