# Transporter-Driven Glycerophosphocholine (GPC) Toxicity Is Conserved from Fission Yeast to Budding Yeast: Roles for Inositol Pyrophosphates and Gde1 Regulation in Fission Yeast

**Authors:** Victoria Lee Hrach, Beate Schwer, Lane Vitek, Michael Borowicz, Aleksei Innokentev, Ana M. Sanchez, Justin R. Singer, Stewart Shuman, Jana Patton-Vogt

PMC · DOI: 10.3390/biom16020309 · Biomolecules · 2026-02-16

## TL;DR

This study shows that GPC toxicity in yeast is driven by transporters and regulated by inositol pyrophosphates and Gde1, a process conserved across yeast species.

## Contribution

The study reveals a conserved mechanism of GPC toxicity involving transporters, inositol pyrophosphates, and Gde1 regulation in fission and budding yeast.

## Key findings

- Tgp1 in fission yeast specifically transports GPC, causing growth impairment but not reduced viability.
- Gde1 hydrolyzes GPC and its deletion or mutations in key domains suppress GPC toxicity.
- GPC toxicity in overexpressing Tgp1 or Git3 is independent of Gde1 and IP8 in both fission and budding yeast.

## Abstract

Glycerophosphocholine (GPC) and glycerophosphoinositol (GPI) are phospholipid metabolites generated by phospholipase-mediated deacylation. In budding yeast, they enter cells via the Git1 permease; in fission yeast, the homolog is Tgp1. This study investigates why GPC is toxic to asp1-STF mutants, where Tgp1 is upregulated due to loss of Asp1 pyrophosphatase, resulting in elevated inositol pyrophosphate 1,5-IP8. We show that S. pombe Tgp1 specifically transports GPC, explaining why GPC, but not GPI, impairs growth. Increased GPC uptake slows doubling time but does not reduce viability. Toxicity is relieved by deletion of Gde1, a phosphodiesterase that hydrolyzes GPC to choline and glycerol-3-phosphate. Mutations in either the Gde1 active site or SPX domain also suppress toxicity, and radiolabeling confirms both domains are required for enzymatic activity. GPC is toxic in cells vastly overexpressing Tgp1 even without elevated IP8, but Gde1 loss does not suppress this effect. Similarly, in S. cerevisiae overexpressing the Candida albicans Git3 transporter, GPC provision causes toxicity independent of Gde1. Loss of Gpc1, the acyltransferase converting GPC to lysophosphatidylcholine, does not alter toxicity in either yeast. These findings highlight a conserved process by which GPC regulates growth and reveal a role for IP8 in modulating this process.

## Linked entities

- **Genes:** BACE2 (beta-secretase 2) [NCBI Gene 25825], tgp1 (plasma membrane glycerophosphodiester transmembrane transporter) [NCBI Gene 2539731], GDE1 (glycerophosphodiester phosphodiesterase 1) [NCBI Gene 51573], GPC1 (glypican 1) [NCBI Gene 2817], GIT1 (GIT ArfGAP 1) [NCBI Gene 28964], git3 (G-protein-coupled receptor Git3) [NCBI Gene 2538770]
- **Proteins:** tgp1 (plasma membrane glycerophosphodiester transmembrane transporter), GDE1 (glycerophosphodiester phosphodiesterase 1), GPC1 (glypican 1), GIT1 (GIT ArfGAP 1), git3 (G-protein-coupled receptor Git3)
- **Chemicals:** Glycerophosphocholine (PubChem CID 11234), Glycerophosphoinositol (PubChem CID 167572), choline (PubChem CID 305), glycerol-3-phosphate (PubChem CID 754)
- **Species:** Candida albicans (taxon 5476)

## Full-text entities

- **Genes:** NMT1 (glycylpeptide N-tetradecanoyltransferase NMT1) [NCBI Gene 850892] {aka CDC72}, ATP6 (F1F0 ATP synthase subunit a) [NCBI Gene 854601] {aka OLI2, OLI4, PHO1}, KCS1 (inositol polyphosphate kinase KCS1) [NCBI Gene 851580], ASP1 (asparaginase ASP1) [NCBI Gene 851920], PHO84 (phosphate transporter PHO84) [NCBI Gene 854916], GIT1 (Git1p) [NCBI Gene 850462], ALY2 (Aly2p) [NCBI Gene 853361] {aka ART3}, GEP4 (phosphatidylglycerophosphatase) [NCBI Gene 856500], ALY1 (Aly1p) [NCBI Gene 853891] {aka ART6}, GDE1 (glycerophosphocholine phosphodiesterase) [NCBI Gene 855994], TEF1 (translation elongation factor EF-1 alpha) [NCBI Gene 856195], ACT1 (actin) [NCBI Gene 850504] {aka ABY1, END7}
- **Diseases:** depression (MESH:D003866), Batten disease (MESH:D009472), GPC toxicosis (MESH:C565846), Toxicity (MESH:D064420), injury to (MESH:D014947)
- **Chemicals:** ammonium hydroxide (MESH:D064753), chloroform (MESH:D002725), lipid (MESH:D008055), H (MESH:D006859), A (MESH:D001151), pyrophosphates (MESH:D011756), LPC (MESH:D008244), sphingolipids (MESH:D013107), 14C]GPC (-), N-butanol (MESH:D020001), CDP-diacylglycerol (MESH:D003567), Thiamine (MESH:D013831), amino acids (MESH:D000596), PC (MESH:D010713), fatty acids (MESH:D005227), TCA (MESH:D014238), G3P (MESH:C029620), -leu (MESH:D007930), H2O (MESH:D014867), phospholipid (MESH:D010743), phenol (MESH:D019800), petroleum ether (MESH:C004544), Nourseothricin (MESH:D013309), PG (MESH:D010715), PGP (MESH:C034358), Glutamate (MESH:D018698), HCl (MESH:D006851), ceramides (MESH:D002518), inositol-1-pyrophosphates (MESH:C010251), ethanol (MESH:D000431), methanol (MESH:D000432), metal (MESH:D008670), IP6 (MESH:D010833), GPC (MESH:D005997), GPI (MESH:C014575), inorganic phosphate (MESH:D010710), EDTA (MESH:D004492), choline (MESH:D002794), nitrogen (MESH:D009584), polyphosphoinositide (MESH:D018129), methylamine (MESH:C027451), ethylformate (MESH:C510888), 14C (MESH:C000615234), agar (MESH:D000362)
- **Species:** Homo sapiens (human, species) [taxon 9606], Candida albicans (species) [taxon 5476], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Mutations:** H397A, H810A, Y21F, K25A, R811A, N139A, Arg811, T4A, His810
- **Cell lines:** STF6/9 — Homo sapiens (Human), Finite cell line (CVCL_A5NG), STF — Homo sapiens (Human), Transformed cell line (CVCL_AQ26), asp1-STF — Homo sapiens (Human), Bare lymphocyte syndrome type 1, Finite cell line (CVCL_A5NE), tgp1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), asp1- — Homo sapiens (Human), Ewing sarcoma, Cancer cell line (CVCL_JM58)

## Full text

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## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937664/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937664/full.md

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Source: https://tomesphere.com/paper/PMC12937664