# A Century-Old Solution for 21st Century Challenges: Current Applications with a Focus on Biocontrol, Environmental Impacts, and Regulatory Perspectives

**Authors:** Anaelle Baud, Inès Rougis, Franck Bertolla

PMC · DOI: 10.3390/antibiotics15020180 · Antibiotics · 2026-02-06

## TL;DR

Bacteriophages are being explored as sustainable, targeted alternatives to antibiotics and pesticides, with applications in health and agriculture, but face challenges in regulation and environmental safety.

## Contribution

This review highlights current phage applications, challenges, and innovations, advocating for tailored regulatory frameworks to support their use in sustainable practices.

## Key findings

- Phages show promise in combating antimicrobial resistance and promoting sustainable biocontrol in agriculture and health.
- Environmental safety and regulatory barriers remain key challenges for large-scale phage deployment.
- Innovations like encapsulation and protective formulations are being developed to improve phage stability and performance.

## Abstract

In the face of rising antimicrobial resistance, food insecurity, and climate change, bacteriophages are gaining renewed attention as promising biological alternatives to antibiotics across human, animal, and plant health sectors. Their high specificity, self-replicating capacity, and biodegradability make them valuable tools for combating antimicrobial or pesticide resistance and promoting sustainable biocontrol. This review discusses commonly accepted selection criteria for therapeutic phages, such as avoiding temperate types and screening for undesirable genes, while acknowledging ongoing debates and exceptions in specific clinical or ecological contexts. An overview of phage-based applications within a One Health framework is provided, spanning human medicine, veterinary practice, aquaculture, food safety and crop protection. Particular attention is given to agricultural biocontrol, where several successful plant protection strategies are highlighted, illustrating the feasibility and diversity of phage-based approaches. Despite their potential, key challenges remain regarding phage stability, formulation, and persistence under environmental conditions. Emerging innovations such as encapsulation, carrier bacteria, and protective formulations aim to enhance field performance. Furthermore, this review emphasizes the need to assess the environmental safety of phage applications, particularly their impacts on natural ecosystems, microbial communities, and ecological functions. Finally, the regulatory and policy challenges that currently limit the large-scale deployment of phages, particularly in the European Union, where they remain evaluated under conventional chemical pesticide frameworks are discussed. The development of dedicated regulatory pathways, better adapted to the specificities of phages, is argued to be essential for supporting their integration into agroecological transition strategies and next-generation antimicrobial policies.

## Full-text entities

- **Genes:** ferredoxin NADP+ reductase [NCBI Gene 29365278], TERF1 (telomeric repeat binding factor 1) [NCBI Gene 7013] {aka PIN2, TRBF1, TRF, TRF1, hTRF1-AS, t-TRF1}
- **Diseases:** toxicity (MESH:D064420), fire blight (MESH:D000092422), Infections (MESH:D007239), alcoholic hepatitis (MESH:D006519), liver damage (MESH:D056486), respiratory, urinary, cutaneous, articular, or systemic (MESH:D015619), bacterial disease (MESH:D001424), otitis externa (MESH:D010032), citrus canker (MESH:D013281), infectious (MESH:D003141), fungal (MESH:D009181), antibiotic (MESH:D004761), Mycobacterium abscessus infection (MESH:D009165), injury to (MESH:D014947), pulmonary infection (MESH:D012141), inflammation (MESH:D007249), cancer (MESH:D009369), hairy root disease (MESH:D007943), diarrhea (MESH:D003967), black spot (MESH:D008796), foodborne illnesses (MESH:D005517)
- **Chemicals:** oligosaccharide (MESH:D009844), penicillin (MESH:D010406), copper sulfate (MESH:D019327), acibenzolar-S-methyl (MESH:C099403), ozone (MESH:D010126), Biocontrol (-), phenylalanine (MESH:D010649), amino acids (MESH:D000596), LPS (MESH:D008070), astaxanthin (MESH:C005948), sucrose (MESH:D013395), Lipid (MESH:D008055), Trichogin GA IV (MESH:C116419), ATP (MESH:D000255), citrate (MESH:D019343), polystyrene (MESH:D011137), manganese (MESH:D008345), ROS (MESH:D017382), Tween 80 (MESH:D011136), tryptophan (MESH:D014364), Peptaibols (MESH:D054848), N-acetylcysteine (MESH:D000111), sugars (MESH:D000073893), phosphorus (MESH:D010758), chitosan (MESH:D048271), alginate (MESH:D000464), stainless steel (MESH:D013193), aromatic amino acids (MESH:D024322), activated carbon (MESH:D002244), polymer (MESH:D011108), ammonium (MESH:D064751), nitrogen (MESH:D009584), zinc sulfide (MESH:C031238), meropenem (MESH:D000077731), tyrosine (MESH:D014443), water (MESH:D014867), carotenoids (MESH:D002338), ethanol (MESH:D000431), drinking water (MESH:D060766), CaCl2 (MESH:D002122)
- **Species:** Listeria monocytogenes (species) [taxon 1639], Flavobacterium psychrophilum (species) [taxon 96345], Daucus carota (carrot, species) [taxon 4039], Delftia tsuruhatensis (species) [taxon 180282], Danio rerio (leopard danio, species) [taxon 7955], Agrobacterium (genus) [taxon 357], Paracidovorax valerianellae (species) [taxon 187868], Solanum lycopersicum (tomato, species) [taxon 4081], Hexapoda (hexapods, subphylum) [taxon 6960], Mycobacteroides abscessus (species) [taxon 36809], Paracidovorax citrulli (species) [taxon 80869], Proteus mirabilis (species) [taxon 584], Homo sapiens (human, species) [taxon 9606], Staphylococcus aureus (species) [taxon 1280], Oncorhynchus mykiss (rainbow trout, species) [taxon 8022], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Sphaerotilus natans (species) [taxon 34103], Ralstonia solanacearum (species) [taxon 305], Bos taurus (bovine, species) [taxon 9913], Acinetobacter baumannii (species) [taxon 470], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Xanthomonas (genus) [taxon 338], Solanum tuberosum (potatoes, species) [taxon 4113], Shigella (genus) [taxon 620], Erwinia amylovora (species) [taxon 552], Lactiplantibacillus plantarum (species) [taxon 1590], Gallus gallus (bantam, species) [taxon 9031], Labeo rohita (Jayanti rohu, species) [taxon 84645], Spinacia oleracea (spinach, species) [taxon 3562], Agaricus bisporus (common mushroom, species) [taxon 5341], Campylobacter (genus) [taxon 194], Escherichia coli (E. coli, species) [taxon 562], Vibrio (genus) [taxon 662], Malus domestica (apple, species) [taxon 3750], Xylella fastidiosa (species) [taxon 2371], Clostridium perfringens (species) [taxon 1502], Canis lupus familiaris (dog, subspecies) [taxon 9615], Pectobacterium (genus) [taxon 122277], Pyrus communis (pear, species) [taxon 23211], Escherichia coli O157:H7 (no rank) [taxon 83334], Staphylococcus arlettae (species) [taxon 29378], Stenotrophomonas (genus) [taxon 40323], Mus musculus (house mouse, species) [taxon 10090], Bacillus amyloliquefaciens (species) [taxon 1390], Burkholderia glumae (species) [taxon 337], Pseudomonas aeruginosa (species) [taxon 287], Sphingomonas (genus) [taxon 13687], Ovis aries (domestic sheep, species) [taxon 9940], Pseudomonas syringae (species) [taxon 317], Enterococcus faecalis (species) [taxon 1351], Salmonella enterica (species) [taxon 28901], Nicotiana tabacum (American tobacco, species) [taxon 4097], Gordonia (genus) [taxon 79255], Corynebacterium diphtheriae (species) [taxon 1717], Artemia salina (species) [taxon 85549], Pantoea agglomerans (species) [taxon 549], Edwardsiella tarda (species) [taxon 636], Aeromonas hydrophila (species) [taxon 644], Sus scrofa (pig, species) [taxon 9823]

## Full text

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## Figures

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## References

157 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937482/full.md

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Source: https://tomesphere.com/paper/PMC12937482