# From Bench to Bedside: Personalized Genomics in the Diagnosis and Treatment of Osteomyelitis

**Authors:** Amir Human Hoveidaei, Arian Rahimzadeh, Sara Mohammadi, Pranav Thota, Kimia Vakili, Parsa Yazdanpanahi, Ali Homaei, Seyed Arad Mosalamiaghili, Jakob Adolf, Janet D. Conway

PMC · DOI: 10.3390/antibiotics15020210 · Antibiotics · 2026-02-14

## TL;DR

This review explores how genetic variations influence the development and treatment of osteomyelitis, suggesting personalized genomic approaches could improve diagnosis and outcomes.

## Contribution

The paper consolidates genetic variants linked to osteomyelitis, offering a framework for personalized treatment strategies based on host genetic profiles.

## Key findings

- Pro-inflammatory SNPs like IL-1β rs16944 and NLRP3 rs10754558 are associated with chronic or post-traumatic osteomyelitis.
- Protective SNPs in NOS2 and VDR genes may aid in infection resolution and improve treatment outcomes.
- Genetic differences in immune pathways highlight opportunities for individualized therapeutic strategies.

## Abstract

Osteomyelitis (OM), an inflammatory condition of the bone tissue, is a complex orthopedic condition marked by chronic inflammation, diagnostic uncertainty, and recurrent infections. Despite standard treatments—including surgical debridement, antimicrobial therapy, and bone reconstruction—many patients continue to experience recurrence and treatment failure. Growing molecular evidence indicates that host genetic factors play a crucial role in shaping immune responses and influencing disease progression in OM. This narrative review synthesizes current knowledge from candidate gene single-nucleotide polymorphism (SNP) association studies to illustrate how specific genetic variations contribute to OM pathogenesis, diagnostic refinement, and treatment outcomes. We examined key immunogenetic variants within genes involved in inflammatory signaling, pathogen recognition, and neutrophil regulation. Our synthesis identifies a landscape of pro-inflammatory SNPs, such as IL-1β rs16944 and NLRP3 rs10754558, that are associated with increased susceptibility to chronic or post-traumatic OM, as well as SNPs that are associated with protective effects that may favor infection resolution, such as within the NOS2 and VDR genes. These SNP-driven differences in inflammasome activity, cytokine pathways, and oxidative stress responses highlight emerging opportunities for individualized therapeutic strategies. This review consolidates these variants, providing a genetic framework to analyze host susceptibility and differentiating high risk from protective genetic profiles. Integrating genomic insights into OM management represents a promising shift toward personalized medicine, enhancing diagnostic precision, informing targeted interventions, and improving prognostic assessment. Continued large-scale validation of candidate SNPs and translational genomic models will be essential to support their future clinical application.

## Linked entities

- **Genes:** IL1B (interleukin 1 beta) [NCBI Gene 3553], NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548], NOS2 (nitric oxide synthase 2) [NCBI Gene 4843], VDR (vitamin D receptor) [NCBI Gene 7421]
- **Diseases:** osteomyelitis (MONDO:0005246)

## Full-text entities

- **Genes:** NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, SLC11A1 (solute carrier family 11 member 1) [NCBI Gene 6556] {aka LSH, NRAMP, NRAMP1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IL1RN (interleukin 1 receptor antagonist) [NCBI Gene 3557] {aka CRMO2, DIRA, ICIL-1RA, IL-1RN, IL-1ra, IL-1ra3}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, PLAT (plasminogen activator, tissue type) [NCBI Gene 5327] {aka T-PA, TPA}, SERPINE1 (serpin family E member 1) [NCBI Gene 5054] {aka PAI, PAI-1, PAI1, PLANH1}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, NFATC1 (nuclear factor of activated T cells 1) [NCBI Gene 4772] {aka NF-ATC, NF-ATc1.2, NFAT2, NFATc}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CTSG (cathepsin G) [NCBI Gene 1511] {aka CATG, CG}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, TLR2 (toll like receptor 2) [NCBI Gene 7097] {aka CD282, TIL4}, BMI1 (BMI1 proto-oncogene, polycomb ring finger) [NCBI Gene 648] {aka FLVI2/BMI1, PCGF4, RNF51, flvi-2/bmi-1}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, VDR (vitamin D receptor) [NCBI Gene 7421] {aka NR1I1, PPP1R163}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}
- **Diseases:** bone infection (MESH:D001847), fracture-related infections (MESH:D007239), HO (MESH:D010019), bacterial (MESH:D001424), Staphylococcus aureus infection (MESH:D013203), tissue injury (MESH:D017695), chronic (MESH:D002908), septicemia (MESH:D018805), infectious (MESH:D003141), injury to (MESH:D014947), inflammation (MESH:D007249), diabetes (MESH:D003920), bone necrosis (MESH:D010020), PTOM (MESH:D004834), PJI (MESH:D057068), post-traumatic and chronic osteomyelitis (MESH:D000070627)
- **Chemicals:** ROS (-), metal (MESH:D008670), vitamin D (MESH:D014807), prostaglandin (MESH:D011453), nitric oxide (MESH:D009569), tobramycin (MESH:D014031), calcium sulphate (MESH:D002133)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Staphylococcus aureus (species) [taxon 1280]
- **Mutations:** -174 G/C, - 519 (A/G), rs4645878, rs2234663, rs2228570, -589 C/T, rs45567233, rs20417, rs3804099, rs7975232, -592 C/A, rs4646972, rs2070874, +3953 C/T, -819 C/T, rs1800587, 889 C/T, rs1544410, rs2248814, rs1800896, rs1799750, rs3731865, rs689466, C/T, rs16944, rs4251961, rs4986790, rs2297514, rs10754558, rs2243248, -572 G/C, rs1144393, rs2430561, rs17235409, rs7525979, rs731236, rs3024496, rs3024491, rs4986791, -330 T/G

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12937331/full.md

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937331/full.md

## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937331/full.md

---
Source: https://tomesphere.com/paper/PMC12937331