# Silent Waterborne Carriers of Carbapenem-Resistant Gram-Negative Bacilli and Antimicrobial Resistance Genes in Rio de Janeiro’s Aquatic Ecosystems

**Authors:** Laura Brandão Martins, Marcos Tavares Carneiro, Kéren Vieira-Alcântara, Thiago Pavoni Gomes Chagas, Viviane Zahner

PMC · DOI: 10.3390/antibiotics15020115 · Antibiotics · 2026-01-23

## TL;DR

This study found antibiotic-resistant bacteria and resistance genes in polluted water bodies in Rio de Janeiro, linking water contamination to public health risks.

## Contribution

The study identifies carbapenem-resistant Gram-negative bacteria and resistance genes in recreational waters exposed to human effluents.

## Key findings

- Carbapenem-resistant isolates accounted for 49.4% of total isolates, with blaKPC, blaTEM, blaVIM, and blaSPM genes detected.
- A Citrobacter braakii isolate showed resistance to all tested antimicrobials, indicating untreatable infection risks.
- The intl1 gene was found in 10% of isolates, suggesting potential horizontal gene transfer.

## Abstract

Background/Objectives: Water pollution caused by human activities disrupts ecosystems and promotes the spread of antimicrobial resistance genes (ARGs), posing a public health threat. This study investigated the presence of resistant Gram-negative bacteria and resistance genes in water from two sites occasionally exposed to domestic and hospital effluents, the Carioca River (CR) and Rodrigo de Freitas Lagoon (RFL), both used for recreation. Methods: Physicochemical parameters and coliform levels were measured. Bacterial isolates were identified by Matrix-Assisted Laser Desorption Ionization–Time-of-Flight Mass Spectrometry (MALDI-TOF MS) and tested for antimicrobial susceptibility using disk diffusion. The Minimum Inhibitory Concentration (MIC) was determined using the E-test® and broth microdilution methods. PCR was used to detect carbapenem resistance and other ARGs from the DNA of bacterial isolates obtained from water samples. Results: CR presented signs of environmental degradation, with low dissolved oxygen and high coliform counts. One Citrobacter braakii isolate showed resistance to all tested antimicrobials, raising concern for untreatable infections. Carbapenem-resistant isolates accounted for 49.4% of the total, harboring blaKPC (20%), blaTEM (5%), blaVIM (5%), and blaSPM (5%). The intl1 gene was found in 10% of isolates, indicating potential horizontal gene transfer. Conclusions: The findings from a one-day sampling reveal the presence of multidrug-resistant bacteria that carry antimicrobial resistance genes in polluted aquatic systems. These highlight the connection between water contamination and antimicrobial resistance. The evidence underscores the urgent need for environmental monitoring and effective management strategies to reduce public health risks.

## Linked entities

- **Genes:** itln1 (intelectin 1) [NCBI Gene 767684]
- **Species:** Citrobacter braakii (taxon 57706)

## Full-text entities

- **Diseases:** Bacterial (MESH:D001424), Gram-negative infections (MESH:D016905), Ilha de Palmas (MESH:D005862), septicemia (MESH:D018805), KPC (MESH:C565455), infections (MESH:D007239), COVID-19 (MESH:D000086382), hypoxic (MESH:D002534), pneumonia (MESH:D011014), injury to (MESH:D014947), AMR (MESH:D060467), CR (MESH:D015827)
- **Chemicals:** IMP (MESH:D015378), lipopeptides (MESH:D055666), SUT (MESH:D015662), beta-lactam (MESH:D047090), ice (MESH:D007053), BHI (-), CTX (MESH:D002439), ATM (MESH:D001398), glycerol (MESH:D005990), TET (MESH:D013752), cephalosporins (MESH:D002511), CRO (MESH:D002443), PPT (MESH:D000077725), AMI (MESH:D000583), hydrocarbons (MESH:D006838), Water (MESH:D014867), ETP (MESH:D000077727), CAZ (MESH:D002442), Carbapenem (MESH:D015780), MER (MESH:D000077731), CPM (MESH:D000077723), levofloxacin (MESH:D064704), TOB (MESH:D014031), GEN (MESH:D005839), CFO (MESH:D002440), salt (MESH:D012492), Oxygen (MESH:D010100), NOR (MESH:D009643), agar (MESH:D000362), CIP (MESH:D002939)
- **Species:** Pseudomonas guariconensis (species) [taxon 1288410], Klebsiella ornithinolytica (species) [taxon 54291], Enterobacter bugandensis (species) [taxon 881260], Comamonas aquatica (species) [taxon 225991], Klebsiella aerogenes (species) [taxon 548], Aeromonas jandaei (species) [taxon 650], Providencia vermicola (species) [taxon 333965], Pseudomonas putida (species) [taxon 303], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Vibrio fluvialis (species) [taxon 676], Homo sapiens (human, species) [taxon 9606], Enterobacter cloacae (species) [taxon 550], Paenacidovorax caeni (species) [taxon 343013], Acinetobacter venetianus (species) [taxon 52133], Aeromonas hydrophila (species) [taxon 644], Enterobacterales (order) [taxon 91347], Enterobacter kobei (species) [taxon 208224], Aeromonas caviae (species) [taxon 648], Pseudomonas nitroreducens (species) [taxon 46680], Escherichia coli (E. coli, species) [taxon 562], Citrobacter braakii (species) [taxon 57706], Pseudomonas aeruginosa (species) [taxon 287], Enterobacter cloacae complex (species group) [taxon 354276], Klebsiella pneumoniae (species) [taxon 573], Aquipseudomonas alcaligenes (species) [taxon 43263], Aeromonas veronii (species) [taxon 654]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937330/full.md

## References

79 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937330/full.md

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Source: https://tomesphere.com/paper/PMC12937330